PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099604.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 598aa    MW: 65809.1 Da    PI: 5.1724
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.61.2e-1072335983374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L+ecA+ +s++d e+a + L rl+e +s++gdp++R+  yf eAL +r+++   +  k+ +  +t+   s+e + ++k++++++P+ kf+hlt
  XP_011099604.1 233 KALIECAR-LSESDPENAVKSLIRLRESVSQNGDPLERVSYYFSEALYSRVSH---QAEKTATIYDTT---SEEFTLSYKALNDACPYSKFAHLT 320
                     79******.67779**************************************9...444444455554...88999******************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+e+++++Hi+Df+i qG+QW+a+lqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ v + +++l
  XP_011099604.1 321 ANQAILEATEKAKKIHILDFGIVQGIQWAAFLQALATRASGKPeRVRISGIPAPALGnsPAASLLATGNRLRDFAKLLDLNFEFEP-VLTPVQEL 414
                     ***************************************77776*********9999889999***********************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + +++rv+p+E+laVn++lql++lldes +  +   + Lkl ksl+P vv++ e e+++n+  Fl+rf +al+yy+a+f+sl+ +l+r+s er  
  XP_011099604.1 415 KGSSFRVHPDEVLAVNFMLQLYNLLDESNEGVE---AALKLAKSLNPCVVTLGEYEVSLNRVGFLHRFKNALKYYTAVFESLDPNLARDSPERLQ 506
                     *************************88888777...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                      Er llgr+i  +v  e+ + rer+e +e+Wr  +e aGF+p+ +s++a +qak ll +++ s  y++ ++   g l l W+d pL++vS+Wr
  XP_011099604.1 507 AERLLLGRRIAGLVGPEELK-RERMEDKESWRFLMEGAGFQPLVFSHYALSQAKILLWNYSySSMYKLVDSspPGFLSLAWNDVPLLTVSSWR 598
                     ******************98.9***************************************9999**99772245566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.461205575IPR005202Transcription factor GRAS
PfamPF035144.1E-105233598IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHQQQLLTIN PFCLTPWPPT SAASSSHHTP  60
TSAYGLTAGF ADPFQVPAAP ETAEPGFQFP NLDHHSSGFR FSDICGGPGG EFDSDEWMGS  120
LMGGGDSTES SNLQTDCDAW QTSSEFSHLY PTDPFPSRLS INSSPPSDLN RVIFSEPPPK  180
SSWVPPSSAP LPASTQPITL QESKPVSKED VAVTSGASTS SAEASPKAKP ILKALIECAR  240
LSESDPENAV KSLIRLRESV SQNGDPLERV SYYFSEALYS RVSHQAEKTA TIYDTTSEEF  300
TLSYKALNDA CPYSKFAHLT ANQAILEATE KAKKIHILDF GIVQGIQWAA FLQALATRAS  360
GKPERVRISG IPAPALGNSP AASLLATGNR LRDFAKLLDL NFEFEPVLTP VQELKGSSFR  420
VHPDEVLAVN FMLQLYNLLD ESNEGVEAAL KLAKSLNPCV VTLGEYEVSL NRVGFLHRFK  480
NALKYYTAVF ESLDPNLARD SPERLQAERL LLGRRIAGLV GPEELKRERM EDKESWRFLM  540
EGAGFQPLVF SHYALSQAKI LLWNYSYSSM YKLVDSSPPG FLSLAWNDVP LLTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1472305983375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099604.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0587247e-58KJ058724.1 Sesamum indicum clone TilSSR_29925 microsatellite Sesame_29925 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099604.10.0scarecrow-like protein 4
RefseqXP_020554688.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2G9GP690.0A0A2G9GP69_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I2Z90.0A0A2G9I2Z9_9LAMI; Uncharacterized protein
STRINGMigut.H00996.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein