PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bZIP | ||||||||
Protein Properties | Length: 354aa MW: 37495.2 Da PI: 6.0741 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77 | 2.5e-24 | 255 | 317 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN++L++el++l++e++kl+se+ XP_011099585.1 255 ERELKRQKRKQSNRESARRSRLRKQAECEELQHRVETLGNENRTLRDELQRLSEECEKLTSEN 317 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.5E-29 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 8.8E-6 | 127 | 224 | No hit | No description |
PRINTS | PR00041 | 1.1E-5 | 159 | 181 | IPR001630 | cAMP response element binding (CREB) protein |
Gene3D | G3DSA:1.20.5.170 | 8.0E-20 | 250 | 314 | No hit | No description |
PRINTS | PR00041 | 1.1E-5 | 254 | 270 | IPR001630 | cAMP response element binding (CREB) protein |
SMART | SM00338 | 2.6E-23 | 255 | 319 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-21 | 255 | 317 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.369 | 257 | 320 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.27E-12 | 258 | 314 | No hit | No description |
CDD | cd14702 | 3.30E-25 | 260 | 310 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 262 | 277 | IPR004827 | Basic-leucine zipper domain |
PRINTS | PR00041 | 1.1E-5 | 272 | 292 | IPR001630 | cAMP response element binding (CREB) protein |
PRINTS | PR00041 | 1.1E-5 | 292 | 309 | IPR001630 | cAMP response element binding (CREB) protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGAGEEGTPA KSSKPASSTQ EASNTPTTPA YPDWSSSMQA FYGAGPTPPF FASTVASPTP 60 FLWGGQHPLM PPYGTPVPYP ALYPPGGVYA HPNMITAPAN VHGTAELEGK AAEGKDRASK 120 KKTKGTSGKT GDGGKATSGS GNDVGTQSGE SGSEGSSDTS DDNNQEPSAT KKGSFDQMLA 180 DGANAQNNAI PVNFQNPVPG NPVVSMPPTN LNIGMDLWNA SPASSGAMKL RPSPPGISPG 240 VAPSGVMNDQ WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQHRVE TLGNENRTLR 300 DELQRLSEEC EKLTSENNSI KEELTRLCGA DAVSKLEDSK SAKHVQSRVD EGNC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 277 | RRSRLRK |
2 | 271 | 278 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099585.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099584.1 | 0.0 | G-box-binding factor 1 | ||||
Refseq | XP_011099585.1 | 0.0 | G-box-binding factor 1 | ||||
Refseq | XP_011099586.1 | 0.0 | G-box-binding factor 1 | ||||
Swissprot | P42774 | 1e-102 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2G9I437 | 0.0 | A0A2G9I437_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00187.1.p | 1e-172 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 3e-92 | G-box binding factor 1 |