PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099584.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bZIP
Protein Properties Length: 354aa    MW: 37495.2 Da    PI: 6.0741
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1772.5e-24255317163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN++L++el++l++e++kl+se+
  XP_011099584.1 255 ERELKRQKRKQSNRESARRSRLRKQAECEELQHRVETLGNENRTLRDELQRLSEECEKLTSEN 317
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-29194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.8E-6127224No hitNo description
PRINTSPR000411.1E-5159181IPR001630cAMP response element binding (CREB) protein
Gene3DG3DSA:1.20.5.1708.0E-20250314No hitNo description
PRINTSPR000411.1E-5254270IPR001630cAMP response element binding (CREB) protein
SMARTSM003382.6E-23255319IPR004827Basic-leucine zipper domain
PfamPF001701.0E-21255317IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.369257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.27E-12258314No hitNo description
CDDcd147023.30E-25260310No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
PRINTSPR000411.1E-5272292IPR001630cAMP response element binding (CREB) protein
PRINTSPR000411.1E-5292309IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGAGEEGTPA KSSKPASSTQ EASNTPTTPA YPDWSSSMQA FYGAGPTPPF FASTVASPTP  60
FLWGGQHPLM PPYGTPVPYP ALYPPGGVYA HPNMITAPAN VHGTAELEGK AAEGKDRASK  120
KKTKGTSGKT GDGGKATSGS GNDVGTQSGE SGSEGSSDTS DDNNQEPSAT KKGSFDQMLA  180
DGANAQNNAI PVNFQNPVPG NPVVSMPPTN LNIGMDLWNA SPASSGAMKL RPSPPGISPG  240
VAPSGVMNDQ WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQHRVE TLGNENRTLR  300
DELQRLSEEC EKLTSENNSI KEELTRLCGA DAVSKLEDSK SAKHVQSRVD EGNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099584.10.0G-box-binding factor 1
RefseqXP_011099585.10.0G-box-binding factor 1
RefseqXP_011099586.10.0G-box-binding factor 1
SwissprotP427741e-102GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A2G9I4370.0A0A2G9I437_9LAMI; Uncharacterized protein
STRINGMigut.H00187.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-92G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]