PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099583.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 524aa    MW: 58354.4 Da    PI: 6.2058
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.62.2e-961665232374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L++ Ae++++++l+l + +Larl+++ +sp+g+p+qR+a+yf+eAL++ la+  s+l      ++ s+++ +++++a+k+fs +sP++ fs 
  XP_011099583.1 166 VDELIRLAECFETNSLQLGHVILARLNQRlSSPTGKPLQRAAFYFKEALQSLLAG--STLP---DHRPVSSSEIVQTIKAQKTFSSISPVPMFSS 255
                     678*************************99*************************..4444...4444455569********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+lea+eg++ vHiiDfdi+ G QW++++++La+R+    + +p lRi +++s+e  +++e + ++e+La+fA+el+++f++++++ +++
  XP_011099583.1 256 FTANQAVLEALEGSTNVHIIDFDIGLGDQWASFMKELADRAasrrAAAPVLRISALVSEE--HEKESRLIRENLAQFARELNIRFHIDFVLIRSF 348
                     **************************************9986666779**********66..9999***************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpre 278
                     e l+++++++  gE++aV ++ ++ r +          + +L+ ++++sP+vvv+v+ e   d ++ s  + +++ le+ys+l++sl +a++  +
  XP_011099583.1 349 EYLSFKAIKFIDGEKVAVLISPAILRRV---------GTGFLSDLRRVSPRVVVLVDVEglKDFGTWSHRQAVIDGLEFYSTLLESLeAANFNGD 434
                     **********************999998.........368*******************5445588888999***************88889888 PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++++ +E ++l ++i++vv ++g++          Wre+l  aG+++v ls++a+ qa++llr+v+++g++v ++++++ l+W+drp+v++SaW
  XP_011099583.1 435 GDWMRRIETFVLFPKIMEVVKAAGRQ-------RTPWREALAGAGLRQVGLSQFAEFQAECLLRRVQVRGFHVVKRQAEMSLCWHDRPIVATSAW 522
                     8************************9.......358*********************************************************** PP

            GRAS 374 r 374
                     r
  XP_011099583.1 523 R 523
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.643139503IPR005202Transcription factor GRAS
PfamPF035147.7E-94166523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKVPFPPNNS KPFNFTITTT HTTTFPAPYE PKSVLDLRRS PSPVADKPVS TGPLPVLEEA  60
DHELINQHLE GWDSLMRELG LHDDSPPDSK PVNIPCTTLP ELPPVTSSFD NQFVSADFGL  120
FSDIPPAYTT TTPLNHNSDA ISSFEGLSGD FNGGGAGNWN VGFDYVDELI RLAECFETNS  180
LQLGHVILAR LNQRLSSPTG KPLQRAAFYF KEALQSLLAG STLPDHRPVS SSEIVQTIKA  240
QKTFSSISPV PMFSSFTANQ AVLEALEGST NVHIIDFDIG LGDQWASFMK ELADRAASRR  300
AAAPVLRISA LVSEEHEKES RLIRENLAQF ARELNIRFHI DFVLIRSFEY LSFKAIKFID  360
GEKVAVLISP AILRRVGTGF LSDLRRVSPR VVVLVDVEGL KDFGTWSHRQ AVIDGLEFYS  420
TLLESLEAAN FNGDGDWMRR IETFVLFPKI MEVVKAAGRQ RTPWREALAG AGLRQVGLSQ  480
FAEFQAECLL RRVQVRGFHV VKRQAEMSLC WHDRPIVATS AWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2917152225378Protein SCARECROW
5b3h_A1e-2917152224377Protein SCARECROW
5b3h_D1e-2917152224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099583.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099583.10.0scarecrow-like protein 15
SwissprotO232101e-139SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2G9FWT70.0A0A2G9FWT7_9LAMI; Uncharacterized protein
STRINGMigut.L00296.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-128GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]