PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 524aa MW: 58354.4 Da PI: 6.2058 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 314.6 | 2.2e-96 | 166 | 523 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 v+ L++ Ae++++++l+l + +Larl+++ +sp+g+p+qR+a+yf+eAL++ la+ s+l ++ s+++ +++++a+k+fs +sP++ fs XP_011099583.1 166 VDELIRLAECFETNSLQLGHVILARLNQRlSSPTGKPLQRAAFYFKEALQSLLAG--STLP---DHRPVSSSEIVQTIKAQKTFSSISPVPMFSS 255 678*************************99*************************..4444...4444455569********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 +taNqa+lea+eg++ vHiiDfdi+ G QW++++++La+R+ + +p lRi +++s+e +++e + ++e+La+fA+el+++f++++++ +++ XP_011099583.1 256 FTANQAVLEALEGSTNVHIIDFDIGLGDQWASFMKELADRAasrrAAAPVLRISALVSEE--HEKESRLIRENLAQFARELNIRFHIDFVLIRSF 348 **************************************9986666779**********66..9999***************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpre 278 e l+++++++ gE++aV ++ ++ r + + +L+ ++++sP+vvv+v+ e d ++ s + +++ le+ys+l++sl +a++ + XP_011099583.1 349 EYLSFKAIKFIDGEKVAVLISPAILRRV---------GTGFLSDLRRVSPRVVVLVDVEglKDFGTWSHRQAVIDGLEFYSTLLESLeAANFNGD 434 **********************999998.........368*******************5445588888999***************88889888 PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++++ +E ++l ++i++vv ++g++ Wre+l aG+++v ls++a+ qa++llr+v+++g++v ++++++ l+W+drp+v++SaW XP_011099583.1 435 GDWMRRIETFVLFPKIMEVVKAAGRQ-------RTPWREALAGAGLRQVGLSQFAEFQAECLLRRVQVRGFHVVKRQAEMSLCWHDRPIVATSAW 522 8************************9.......358*********************************************************** PP GRAS 374 r 374 r XP_011099583.1 523 R 523 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.643 | 139 | 503 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-94 | 166 | 523 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MKVPFPPNNS KPFNFTITTT HTTTFPAPYE PKSVLDLRRS PSPVADKPVS TGPLPVLEEA 60 DHELINQHLE GWDSLMRELG LHDDSPPDSK PVNIPCTTLP ELPPVTSSFD NQFVSADFGL 120 FSDIPPAYTT TTPLNHNSDA ISSFEGLSGD FNGGGAGNWN VGFDYVDELI RLAECFETNS 180 LQLGHVILAR LNQRLSSPTG KPLQRAAFYF KEALQSLLAG STLPDHRPVS SSEIVQTIKA 240 QKTFSSISPV PMFSSFTANQ AVLEALEGST NVHIIDFDIG LGDQWASFMK ELADRAASRR 300 AAAPVLRISA LVSEEHEKES RLIRENLAQF ARELNIRFHI DFVLIRSFEY LSFKAIKFID 360 GEKVAVLISP AILRRVGTGF LSDLRRVSPR VVVLVDVEGL KDFGTWSHRQ AVIDGLEFYS 420 TLLESLEAAN FNGDGDWMRR IETFVLFPKI MEVVKAAGRQ RTPWREALAG AGLRQVGLSQ 480 FAEFQAECLL RRVQVRGFHV VKRQAEMSLC WHDRPIVATS AWRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-29 | 171 | 522 | 25 | 378 | Protein SCARECROW |
5b3h_A | 1e-29 | 171 | 522 | 24 | 377 | Protein SCARECROW |
5b3h_D | 1e-29 | 171 | 522 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099583.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099583.1 | 0.0 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-139 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A2G9FWT7 | 0.0 | A0A2G9FWT7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L00296.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8305 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-128 | GRAS family protein |
Publications ? help Back to Top | |||
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