PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099469.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 264aa    MW: 30126.3 Da    PI: 10.3074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl
   XP_011099469.1 10 KGAWTKEEDILLTKCIDKYGEGKWHQVPIRAGLNRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding49.78.5e-1663108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E +l+v+++k+lG++ W++Ia +++ gRt++++k++w++++
   XP_011099469.1  63 RGLFTKDEVDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTHM 108
                      788*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.113557IPR017930Myb domain
SuperFamilySSF466897.86E-287104IPR009057Homeodomain-like
SMARTSM007174.8E-14959IPR001005SANT/Myb domain
PfamPF002493.8E-151057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-201164IPR009057Homeodomain-like
CDDcd001671.21E-91257No hitNo description
PROSITE profilePS5129425.71758112IPR017930Myb domain
SMARTSM007173.3E-1562110IPR001005SANT/Myb domain
PfamPF002495.8E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2365112IPR009057Homeodomain-like
CDDcd001672.53E-1066108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MENKASGLRK GAWTKEEDIL LTKCIDKYGE GKWHQVPIRA GLNRCRKSCR LRWLNYLRPN  60
IKRGLFTKDE VDLIVRLHKL LGNRWSLIAG RLPGRTANDV KNFWNTHMHR KLSGVGGCRE  120
KAMQKDITKS NIIRPRPRTF SKLQLTAPVA WSSETSKTNR ENPENKKLMM STSPSSPLKD  180
DDANLIKSTQ PPSSSSPDEC IQWWSNLLEM SENRRDGLNT LSLPDDGQHQ MEPLLSSNSY  240
ANQRGLSSLS GDVDVWELVN FQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2381122105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099468.10.0transcription factor MYB1
SwissprotQ9FNV91e-65MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2G9H2Q59e-89A0A2G9H2Q5_9LAMI; Transcription factor, Myb superfamily
TrEMBLA0A2G9HVP69e-89A0A2G9HVP6_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00283.1.p5e-77(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-68myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]