PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 36903 Da PI: 10.1727 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 72 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl XP_011099468.1 72 KGAWTKEEDILLTKCIDKYGEGKWHQVPIRAGLNRCRKSCRLRWLNYL 119 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 125 | 170 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E +l+v+++k+lG++ W++Ia +++ gRt++++k++w++++ XP_011099468.1 125 RGLFTKDEVDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTHM 170 788*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.113 | 67 | 119 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-27 | 69 | 166 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-14 | 71 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 72 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 73 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.19E-10 | 74 | 119 | No hit | No description |
PROSITE profile | PS51294 | 25.717 | 120 | 174 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-15 | 124 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-14 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 127 | 174 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-10 | 128 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MRSADEDDGG IAAALLNQET TTQASNHLHS ITLHLRPNVK GLHSITLHLR PAEKLVFLRD 60 GLMENKASGL RKGAWTKEED ILLTKCIDKY GEGKWHQVPI RAGLNRCRKS CRLRWLNYLR 120 PNIKRGLFTK DEVDLIVRLH KLLGNRWSLI AGRLPGRTAN DVKNFWNTHM HRKLSGVGGC 180 REKAMQKDIT KSNIIRPRPR TFSKLQLTAP VAWSSETSKT NRENPENKKL MMSTSPSSPL 240 KDDDANLIKS TQPPSSSSPD ECIQWWSNLL EMSENRRDGL NTLSLPDDGQ HQMEPLLSSN 300 SYANQRGLSS LSGDVDVWEL VNFQNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-23 | 70 | 174 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-22 | 70 | 174 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-22 | 70 | 174 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 6e-23 | 70 | 174 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 4e-23 | 70 | 174 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-23 | 70 | 174 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099468.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099468.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | A0A2G9H2Q5 | 2e-88 | A0A2G9H2Q5_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.H00283.1.p | 3e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-67 | myb domain protein 113 |