PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099468.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 326aa    MW: 36903 Da    PI: 10.1727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-1672119148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl
   XP_011099468.1  72 KGAWTKEEDILLTKCIDKYGEGKWHQVPIRAGLNRCRKSCRLRWLNYL 119
                      79********************************************97 PP

2Myb_DNA-binding49.31.2e-15125170148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E +l+v+++k+lG++ W++Ia +++ gRt++++k++w++++
   XP_011099468.1 125 RGLFTKDEVDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTHM 170
                      788*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.11367119IPR017930Myb domain
SuperFamilySSF466891.17E-2769166IPR009057Homeodomain-like
SMARTSM007174.8E-1471121IPR001005SANT/Myb domain
PfamPF002495.3E-1572119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2073126IPR009057Homeodomain-like
CDDcd001677.19E-1074119No hitNo description
PROSITE profilePS5129425.717120174IPR017930Myb domain
SMARTSM007173.3E-15124172IPR001005SANT/Myb domain
PfamPF002498.0E-14125169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-23127174IPR009057Homeodomain-like
CDDcd001671.61E-10128170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRSADEDDGG IAAALLNQET TTQASNHLHS ITLHLRPNVK GLHSITLHLR PAEKLVFLRD  60
GLMENKASGL RKGAWTKEED ILLTKCIDKY GEGKWHQVPI RAGLNRCRKS CRLRWLNYLR  120
PNIKRGLFTK DEVDLIVRLH KLLGNRWSLI AGRLPGRTAN DVKNFWNTHM HRKLSGVGGC  180
REKAMQKDIT KSNIIRPRPR TFSKLQLTAP VAWSSETSKT NRENPENKKL MMSTSPSSPL  240
KDDDANLIKS TQPPSSSSPD ECIQWWSNLL EMSENRRDGL NTLSLPDDGQ HQMEPLLSSN  300
SYANQRGLSS LSGDVDVWEL VNFQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-23701742105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-227017456159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-227017456159MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-237017425128MYB TRANSFORMING PROTEIN
1mse_C4e-23701742105C-Myb DNA-Binding Domain
1msf_C4e-23701742105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099468.10.0transcription factor MYB1
TrEMBLA0A2G9H2Q52e-88A0A2G9H2Q5_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00283.1.p3e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-67myb domain protein 113