PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099465.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27021 Da PI: 10.253 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.3 | 4.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++ rqvtfskRr g+lKKA EL +LCdaev viifsstgklye+ss XP_011099465.1 9 ERIDNSTSRQVTFSKRRSGLLKKARELAILCDAEVGVIIFSSTGKLYEFSS 59 69***********************************************96 PP | |||||||
2 | K-box | 81.5 | 1.9e-27 | 83 | 171 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + +q+e+a L+++++ Lq+++R+l+Ge+L L++k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + ++++n +L kk++ XP_011099465.1 83 GSEIKFWQREAATLRQQLQDLQENHRKLMGEELYGLNVKDLQRLENQLEMSLRGVRMKKEQILTAEIQELTRKGNLIHQQNVELYKKVK 171 57889*********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.567 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.21E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.9E-26 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.103 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKIVIER IDNSTSRQVT FSKRRSGLLK KARELAILCD AEVGVIIFSS TGKLYEFSST 60 SMKSIIDRYT KAKEAHHQLL NPGSEIKFWQ REAATLRQQL QDLQENHRKL MGEELYGLNV 120 KDLQRLENQL EMSLRGVRMK KEQILTAEIQ ELTRKGNLIH QQNVELYKKV KYIEQENMEL 180 NRKAYGAKDH IAANTTGFLP FGFTISTQLQ SPIQLQLSPP AVQDMETQTR ANKSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_B | 1e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_C | 1e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_D | 1e-22 | 1 | 81 | 1 | 81 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099465.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099465.1 | 1e-174 | MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q9SZJ6 | 1e-103 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | P92927 | 1e-125 | P92927_ANTMA; DEFH125 protein | ||||
STRING | Migut.H00286.1.p | 1e-123 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-100 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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