PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GeBP | ||||||||
Protein Properties | Length: 362aa MW: 40295.5 Da PI: 5.1645 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 122.1 | 2.7e-38 | 172 | 267 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlwse+Deiv+LqG+id+ +k++++p +d++af++f+kk+++++++++ql +Kir+L++K++++++k k+gk+ +fsk+h+q+++elskkiW XP_011099453.1 172 LFQRLWSEDDEIVILQGMIDYVTKKKSDPAADLNAFHDFIKKNLHVDATRTQLQDKIRSLRRKYENNKSKEKEGKDRTFSKPHEQQAYELSKKIW 266 69********************************************************************************************* PP DUF573 97 g 97 g XP_011099453.1 267 G 267 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.4E-35 | 173 | 267 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAKNREPEKP VESETESGEE EDEVATSEDV GSQDSDSEPD LAQVSKKPSS STQATPKKAQ 60 PQSSSKPQPQ PPSSSDEEES GSESESDSDE PDPNVKPIAS KPMENEQKSS DGARKLRSKP 120 IASDLVTPAK STAAKRPAEE KEPETKDAKK SKKKAEPDTY AKKSTDDSKK LLFQRLWSED 180 DEIVILQGMI DYVTKKKSDP AADLNAFHDF IKKNLHVDAT RTQLQDKIRS LRRKYENNKS 240 KEKEGKDRTF SKPHEQQAYE LSKKIWGNES GKENGVENEE AKVVNSDPES LLPAKRVNSG 300 GVTVEERILR IGAEYFESGK GLEGEKEWKK LRVEEIEVYL RQLEVKTARA KLALDAVKSG 360 GH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099453.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099453.1 | 0.0 | probable transcription factor At4g00390 | ||||
TrEMBL | A0A2Z7D2M7 | 1e-104 | A0A2Z7D2M7_9LAMI; Mediator-associated protein 1 | ||||
STRING | Migut.M01263.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 3e-30 | DNA-binding storekeeper protein-related transcriptional regulator |