PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 31996.2 Da PI: 6.5302 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.1 | 3e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l+ +++++G g W+tI + R+ ++k++w+++ XP_011099389.1 5 KQKWTAEEEGALKAGIHKYGIGKWSTILKDPEfstvlRSRSNVDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.281 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.62E-19 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.5E-13 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.36 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.99E-15 | 122 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.6E-15 | 123 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.0E-11 | 126 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGAPKQKWTA EEEGALKAGI HKYGIGKWST ILKDPEFSTV LRSRSNVDLK DKWRNLNCMA 60 NGLGSRHRAR VASKSNQLTA KQDEDTIVPS SMVDKDSEII NVTSLGASSE ISHDAGLRKQ 120 ISRLDDHILE AITKLKEPRG SSRPAIAQYI EEHYSAPPDF ERTLAASLKV LTDNGRLVKV 180 KHQYRIAPRS VSLVSGKEPQ LLLENGAKKD PSEAERNSVI LLTKAKIDAE LEKMKSMSAE 240 EAAAAAAQAV AEAEAAIAEA EAAAREAEEA EAEAEAAQCF ADAAQKALIC QTIRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099389.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099387.1 | 0.0 | telomere repeat-binding factor 1 isoform X3 | ||||
TrEMBL | A0A2G9H8J9 | 1e-152 | A0A2G9H8J9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00343.1.p | 1e-135 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 7e-69 | telomere repeat binding factor 1 |