PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 450aa    MW: 50446.9 Da    PI: 6.2384
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.87e-92544472373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn...sseelaalklfsevsPilk 92 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL ar a+s++ +l+ a++  ++++ +   ++ ++  l  f++++P+++
  XP_011099354.1  54 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAKSGNcKLFTAMANVHANDLSmnnHKFSIIELASFVDLTPWHR 148
                     79****************************************************55436666665544443333225555555566********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                     f++ +aN a+  a+eg + vHi+D+++++++Q p+L++++a+R egpp +++T+ g++e +      ++ee+g++L +fA++ +v +ef+v+   
  XP_011099354.1 149 FGFTAANAAV--ALEGYSVVHIVDLSLTHCMQIPTLIDSIATRLEGPPLVKLTVAGAMEDFppmLDLSYEELGSKLVNFARSRNVVMEFRVIpss 241
                     *********9..8********************************************999898888999***********************998 PP

            GRAS 182 ....vakrledleleeL.rvkpgEalaVnlvlqlhrll...........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                          ++ +e+l++++L rv++gEal++n++++lh+++           +++ +++s r+ +Lk++++l P++vv+v+++ad +s+++++r+ +a
  XP_011099354.1 242 ssngFSSLIEQLRMQQLiRVENGEALVINCHMMLHYIPeetlssgvpntSSPIESTSLRTMFLKALRGLDPTIVVLVDEDADFTSNNLVNRLRSA 336
                     7766666777788888768888****************9999999997666666667999*********************************** PP

            GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                      +y +  +d++++ lpr s++r+++E+  l ++i+nv+++eg +r+er e ++kW +r+++a F+ v++se+a +++k +l +++  g+ +++e+
  XP_011099354.1 337 YNYLWIPYDTVDTFLPRGSKQRQWYEAD-LCWKIENVISHEGPQRVERLEPKSKWVQRMRNASFRGVAFSEEAITEVKNMLDEHA-AGWGLKKED 429
                     ****************************.99******************************************************.999****** PP

            GRAS 356 gslvlgWkdrpLvsvSaW 373
                     + lvl+Wk++++v+++aW
  XP_011099354.1 430 EDLVLTWKGHNVVFATAW 447
                     ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.77727429IPR005202Transcription factor GRAS
PfamPF035142.4E-8954447IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MMQFTETYCP SPLHKIPPLP NLPVSKNQMY RARPWPGFPT PKSLGNFGDA NCMEQLLVHC  60
ANAIESNDAT LAQQILWVLN NIAPPDGDSN QRLTCGFLRA LIARAAKSGN CKLFTAMANV  120
HANDLSMNNH KFSIIELASF VDLTPWHRFG FTAANAAVAL EGYSVVHIVD LSLTHCMQIP  180
TLIDSIATRL EGPPLVKLTV AGAMEDFPPM LDLSYEELGS KLVNFARSRN VVMEFRVIPS  240
SSSNGFSSLI EQLRMQQLIR VENGEALVIN CHMMLHYIPE ETLSSGVPNT SSPIESTSLR  300
TMFLKALRGL DPTIVVLVDE DADFTSNNLV NRLRSAYNYL WIPYDTVDTF LPRGSKQRQW  360
YEADLCWKIE NVISHEGPQR VERLEPKSKW VQRMRNASFR GVAFSEEAIT EVKNMLDEHA  420
AGWGLKKEDE DLVLTWKGHN VVFATAWIPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-484044974474Protein SHORT-ROOT
5b3h_B4e-484044920420Protein SHORT-ROOT
5b3h_E4e-484044920420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099354.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2Z7B8430.0A0A2Z7B843_9LAMI; Scarecrow-like protein 32
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein