PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099313.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 360aa    MW: 39804.8 Da    PI: 8.2386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.9e-201964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_011099313.1 19 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 64
                     79******************************.***********985 PP

2Myb_DNA-binding56.37.5e-1873115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
   XP_011099313.1  73 AFTPEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 115
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.4541469IPR017930Myb domain
SuperFamilySSF466891.14E-3216112IPR009057Homeodomain-like
SMARTSM007173.1E-181867IPR001005SANT/Myb domain
PfamPF002493.5E-201964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-272072IPR009057Homeodomain-like
CDDcd001673.32E-172163No hitNo description
SMARTSM007173.4E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129421.9371120IPR017930Myb domain
PfamPF002494.5E-1573115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2373119IPR009057Homeodomain-like
CDDcd001671.97E-1273116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSANTSGDLC KKMDMDRIKG PWSPEEDELL QQLVQKHGPR NWSLISKSIP GRSGKSCRLR  60
WCNQLSPQVE HRAFTPEEDE TIIRAHAKFG NKWATIARLL SGRTDNAIKN HWNSTLKRKC  120
ASLSSDEGNF NDNNEFGSQT ERPLKRSVSA GSGVPVSGLY LSPGSPSGSD VSDSSLPVMS  180
ASHVYKPVAR AGAVLPSQLE TASSPPDPPT SLSLSLPGVE SKQSTNHETE TAPPKTNPIQ  240
LLPVLPTPPP PQPPSPPARP IAIPLQPHAP INNRVGFGSP VTAPAPPLPQ EQDKIFMPFS  300
AELMAVMQDM IRAEVRNYMA GFEQQHQRYQ QQQYIQQQQH NHQQQQQQHQ YQQMCMQQAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-401812057159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-401812057159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099313.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099313.10.0transcription factor MYB44-like
SwissprotO231604e-98MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2G9G8X41e-173A0A2G9G8X4_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_07s0129g01050.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-73myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]