PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 318aa MW: 35760.6 Da PI: 7.0751 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.4 | 7.6e-29 | 239 | 289 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+peLH+rFv+a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQ XP_011099214.1 239 KQRRCWSPELHKRFVDALQHLGGAQTATPKQIRELMKVDGLTNDEVKSHLQ 289 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.88E-14 | 236 | 290 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.546 | 236 | 296 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 236 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-24 | 239 | 290 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.7E-6 | 241 | 289 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGFEKKMGEN SRQLNLDVGS IFVPKTISDI LTEVSMMHDF SKKSSKLDFY VHSLEEEMRK 60 VDAFKRELPH CMQLLRDAIE TLKKESLRWK GREMGPVMEE FIPLKGDSEG GGRAKLSTDF 120 SEKKNWMSSV QLWSTPVHYE NQDSVLSLRS RHQEEEGSGI DSQFQGCNNI KNSGGAFLPF 180 KKAPGLSIKE QKRDSASAVN GGLSLSIPVA ELELESESPD LISVKEPSAF LRPQLQQRKQ 240 RRCWSPELHK RFVDALQHLG GAQTATPKQI RELMKVDGLT NDEVKSHLQV EIQASHQEAA 300 KHIGRDEGFL VGGTRVAE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099214.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ123021 | 1e-124 | HQ123021.1 Sesamum indicum clone SiMS54 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099214.1 | 0.0 | myb family transcription factor EFM isoform X2 | ||||
TrEMBL | A0A1S4C302 | 9e-98 | A0A1S4C302_TOBAC; uncharacterized protein LOC107814623 | ||||
STRING | XP_009622698.1 | 3e-98 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 3e-50 | G2-like family protein |