PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099213.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 360aa    MW: 40313.5 Da    PI: 7.1133
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.9e-33239294156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_011099213.1 239 KQRRCWSPELHKRFVDALQHLGGAQTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 294
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-30236297IPR009057Homeodomain-like
SuperFamilySSF466899.56E-19236297IPR009057Homeodomain-like
PROSITE profilePS5129413.457236296IPR017930Myb domain
TIGRFAMsTIGR015575.3E-27239294IPR006447Myb domain, plants
PfamPF002491.1E-7241292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGFEKKMGEN SRQLNLDVGS IFVPKTISDI LTEVSMMHDF SKKSSKLDFY VHSLEEEMRK  60
VDAFKRELPH CMQLLRDAIE TLKKESLRWK GREMGPVMEE FIPLKGDSEG GGRAKLSTDF  120
SEKKNWMSSV QLWSTPVHYE NQDSVLSLRS RHQEEEGSGI DSQFQGCNNI KNSGGAFLPF  180
KKAPGLSIKE QKRDSASAVN GGLSLSIPVA ELELESESPD LISVKEPSAF LRPQLQQRKQ  240
RRCWSPELHK RFVDALQHLG GAQTATPKQI RELMKVDGLT NDEVKSHLQK YRLHIRKLPS  300
TSGGTRDFSW VAQELPNKQM VAHSGSPQDH LNLGGSAKRG SGSAIGGDSM EEDEDDKCES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-15239296157Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1230211e-124HQ123021.1 Sesamum indicum clone SiMS54 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099213.10.0myb family transcription factor EFM isoform X1
TrEMBLA0A1S4BGB31e-109A0A1S4BGB3_TOBAC; uncharacterized protein LOC107807956
STRINGXP_009796235.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-56G2-like family protein