PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29413.6 Da PI: 8.5916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.8 | 6.9e-20 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv++v+q+G g+W+ +++ g++R++k+c++rw +yl XP_011099170.1 13 KGPWTPEEDKLLVEYVRQHGEGRWSCVSKSSGLNRSGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 67 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ XP_011099170.1 67 GHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110 667******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.467 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.17E-32 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-16 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.89E-12 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.84 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-9 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MESWGVSEQG WRKGPWTPEE DKLLVEYVRQ HGEGRWSCVS KSSGLNRSGK SCRLRWVNYL 60 RPGLKKGHLT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKKRKSSRND 120 QEVKRKFHRQ KQHHTLQEND KNDSTKASPD CQLAAEATSD REKSNQEMDV RGNVNDNVEN 180 HHQLLPLMMY QDSSAWFDFI PADNYLWGGL WNLDDQNGCS KMAIQGQANG ADYPRGGGGG 240 GDHAINYIHS GGGGYIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 13 | 114 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099170.1 | 0.0 | myb-related protein 305 | ||||
TrEMBL | A0A2C9WBD7 | 9e-90 | A0A2C9WBD7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029259m | 4e-84 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 2e-72 | myb domain protein 121 |