PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099169.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 449aa    MW: 49943.4 Da    PI: 6.7706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.46.3e-104654441373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++vs+g+l+ a+a+L++ls la+ +gdpmqRl a f+ ALaarl++ +++lykal+   +    s ++  a+++fs ++P+l f++
  XP_011099169.1  65 LIQLLLTCANHVSAGNLHHADACLCQLSRLAAITGDPMQRLCARFASALAARLVKRWPGLYKALNNGGQV---SCDVDRARSVFSRAFPCLSFAY 156
                     689*************************************************************999887...7888889999************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      + N+++ +av+ge ++H+iD++ +    W+++++aLa   p++ p l+iT v++    +ke+ e++g rL k Ae+l++ f+fn+ v   l +l
  XP_011099169.1 157 AIINRTLIQAVSGEPEIHVIDLSSGDSKLWVPFIRALAdGGPDERPCLKITCVSR----NKEAQERLGARLVKEAESLKMAFQFNP-VNAGLREL 246
                     **************************************445699***********....99*************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                     +l++L++k+gEala  ++l lh ll              +++v+  ++ +e+L++vks+ Pk + +veqe++hns+++++rf+e l++ysalfds
  XP_011099169.1 247 TLDMLQIKTGEALALTSILGLHVLLaeddrvdanfglrrSNDVKECKRMNEFLEMVKSIGPKAILLVEQESNHNSNRLVDRFVEGLHFYSALFDS 341
                     *************************************8866677777899********************************************* PP

            GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                     ++a ++  s  +r+++E++ lg+ei+n+va eg +r++rhe+++ W  r+++aGF+p++l ++++++a++++  ++  g+++ +++gsl+++W+d
  XP_011099169.1 342 IDAAFGGLScPDRTVLEEM-LGKEIENIVAGEGMDREARHEEYSMWAVRFTRAGFRPIRLWYEVMEEARRVVDGYGPGGFKITSQKGSLMICWHD 435
                     ********99999999999.********************************************************99***************** PP

            GRAS 365 rpLvsvSaW 373
                     rp+++vSaW
  XP_011099169.1 436 RPIYAVSAW 444
                     ********* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.87239425IPR005202Transcription factor GRAS
PfamPF035142.2E-10165444IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSMKGMNSYQ TVALGNLWDE KSRLSFSEVD LTDILMKPDV TLSLSLPPSP TTNDGLNPQE  60
RGVKLIQLLL TCANHVSAGN LHHADACLCQ LSRLAAITGD PMQRLCARFA SALAARLVKR  120
WPGLYKALNN GGQVSCDVDR ARSVFSRAFP CLSFAYAIIN RTLIQAVSGE PEIHVIDLSS  180
GDSKLWVPFI RALADGGPDE RPCLKITCVS RNKEAQERLG ARLVKEAESL KMAFQFNPVN  240
AGLRELTLDM LQIKTGEALA LTSILGLHVL LAEDDRVDAN FGLRRSNDVK ECKRMNEFLE  300
MVKSIGPKAI LLVEQESNHN SNRLVDRFVE GLHFYSALFD SIDAAFGGLS CPDRTVLEEM  360
LGKEIENIVA GEGMDREARH EEYSMWAVRF TRAGFRPIRL WYEVMEEARR VVDGYGPGGF  420
KITSQKGSLM ICWHDRPIYA VSAWNCISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-416044514379Protein SCARECROW
5b3h_A3e-416044513378Protein SCARECROW
5b3h_D3e-416044513378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554883.10.0scarecrow-like protein 3
RefseqXP_020554884.10.0scarecrow-like protein 3
RefseqXP_020554885.10.0scarecrow-like protein 3
RefseqXP_020554886.10.0scarecrow-like protein 3
TrEMBLA0A2G9IBS10.0A0A2G9IBS1_9LAMI; Uncharacterized protein
STRINGMigut.H00592.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-104scarecrow-like 3