PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099137.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 271aa    MW: 30087.6 Da    PI: 7.4618
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.59e-38101022103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+e g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell +
  XP_011099137.1  10 FLTKTYHLVDDPKTDDVISWNEAGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANENFKRGEKELLAQ 95 
                     9***************************************************************9999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_011099137.1  96 IRRRKTA 102
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.06E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-331099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGQRSVPAPF LTKTYHLVDD PKTDDVISWN EAGTTFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANENFKRGEK ELLAQIRRRK TASTQNPGSG KPGAADNLAS  120
PASSGEDLGS SSTSSPDSKN PGSLETHVSA QLADLSGENE KLRKDNQMLS SELAQTRKQC  180
DELIAFLTQR VKVAPEQISH IMNLQVGGGN SDCDDHETEN CMKLFGVMVK KKRGCSENTD  240
FSGPNRKETK TSMEVSVPWL KISEESSKVC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-27210122131Heat shock factor protein 1
5d5v_B5e-27210122131Heat shock factor protein 1
5d5v_D5e-27210122131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099137.10.0heat shock factor protein HSF24
SwissprotP223351e-108HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2G9GXX11e-157A0A2G9GXX1_9LAMI; Uncharacterized protein
STRINGXP_009797839.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-77heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]