PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099060.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 376aa    MW: 41944.9 Da    PI: 4.5393
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36461372102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye++ed++++++isws+ +nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll++
  XP_011099060.1  46 FLIKTYEMVEDPSTDSVISWSRGKNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKT 131
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_011099060.1 132 IKRRRN 137
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEGVKVKVEE ECAAAGYGGG AVASLSSSSS SPLPMEGLHE VGPPPFLIKT YEMVEDPSTD  60
SVISWSRGKN SFIVWDSHKF STTLLPRYFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG  120
FLGGQKHLLK TIKRRRNVMQ GITQQSGGGS CVEIGQYGME EELERLKRDR NLLMAEIVKL  180
KQQQQSSRER IVAIEDRILS TEKKQQHIMS FLAKAFKSPL FVQQYVDKYA QREDKQHIEI  240
GHKRRLTMSP SVENFQEVVT VAAGGSGPSA DPNELDDIDL EVKTLFSAAL DDESSSDVKG  300
SAAEMVPSSN DAGLNPTTEE IWEKFLNDDL IGGDDTEEVL AAEHLSDDVE VEELVAKTSE  360
WTGEDLQDLV DQLGFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-25201351129Heat shock factor protein 1
5d5v_B8e-25201351129Heat shock factor protein 1
5d5v_D8e-25201351129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549475.10.0heat shock factor protein HSF30
SwissprotP411521e-153HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2G9H6U11e-166A0A2G9H6U1_9LAMI; Heat shock transcription factor
STRINGXP_009799323.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-127heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]