PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28954.7 Da PI: 9.99 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gkl++ys+ XP_011099043.1 9 KRIENKISRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLFDYST 59 79***********************************************96 PP | |||||||
2 | K-box | 94 | 2.5e-31 | 78 | 172 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +k +++++e+++ e+ kL +++e Lqr+ R++ G+dL+sLs +eL++LeqqLe++lk+iR++Kn+l+ e+i++lq+kek+lq++n+ L k+l+e XP_011099043.1 78 QKVSTDSEQENWCLEYPKLVARVELLQRNMRNYAGQDLDSLSSRELHSLEQQLESALKRIRTRKNQLMNESISQLQRKEKSLQDQNNLLAKQLKE 172 33378999***********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.286 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.71E-39 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-32 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-27 | 81 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.938 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRGRVQLKR IENKISRQVT FSKRRSGLQK KAHEISVLCD AEVALIVFST KGKLFDYSTD 60 SRMERIVERY ERYTYSHQKV STDSEQENWC LEYPKLVARV ELLQRNMRNY AGQDLDSLSS 120 RELHSLEQQL ESALKRIRTR KNQLMNESIS QLQRKEKSLQ DQNNLLAKQL KEKEKQQTLE 180 EQTQQEQEGL PQTQSTFRLP QSPPELHRIP SLAIGAGSQH RTGDEETGSP SRPTSSNTLI 240 PPWLLSHVKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
5f28_A | 1e-20 | 1 | 78 | 1 | 77 | MEF2C |
5f28_B | 1e-20 | 1 | 78 | 1 | 77 | MEF2C |
5f28_C | 1e-20 | 1 | 78 | 1 | 77 | MEF2C |
5f28_D | 1e-20 | 1 | 78 | 1 | 77 | MEF2C |
6byy_A | 1e-20 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6c9l_A | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-21 | 1 | 83 | 1 | 83 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099043.1 | 0.0 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 9e-95 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | Q941M9 | 1e-116 | Q941M9_ANTMA; MADS-box transcription factor DEFH28 | ||||
STRING | Migut.H00589.1.p | 1e-106 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 6e-85 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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