PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099023.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 356aa    MW: 39532.5 Da    PI: 7.3473
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.82.8e-3251166289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s   ++ +++ s+s+++ g       
  XP_011099023.1  51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQIPQGSLIgQSLEQVLSNSHHELGasqsdkh 145
                     689*************************************************************6655544466666666666555554334444 PP

             TCP  89 ....................k 89 
                                         +
  XP_011099023.1 146 glkigggsinwdindpltqpR 166
                     555556666666655555551 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2953183IPR005333Transcription factor, TCP
PROSITE profilePS5136932.01953111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIPRETDFTK QESSTSHDHN PSKNFKASSS SSTTSWSRFK DPRIVRVSRA FGGKDRHSKV  60
CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLQIPQGS  120
LIGQSLEQVL SNSHHELGAS QSDKHGLKIG GGSINWDIND PLTQPRPSVF GGKSKDFEGE  180
TSGRDDQANW ARNEEDQRQF NLENQSAAYN FSSSQNPSSL PINAVNPFNS FVRWDPSNLT  240
LSHPPRSHGL MAQPEDWHNF SLVPLQPTLS TVPSGSHHHH QVLVYQPAGL STQSYFPSQM  300
PPTGTEFDPK QVNFQSSHVS NSSLSSPVHD STTQPVRPIH FNMTANLLPS QNNDGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1858112155Putative transcription factor PCF6
5zkt_B3e-1858112155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0699802e-56KJ069980.1 Sesamum indicum clone TilSSR_41181 microsatellite Sesame_41181 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099021.10.0transcription factor TCP5-like
RefseqXP_011099023.10.0transcription factor TCP5-like
TrEMBLA0A2Z7D3925e-97A0A2Z7D392_9LAMI; Plastid transcription factor 1 isoform 1
STRINGVIT_14s0068g00330.t012e-88(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5