PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099005.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 708aa    MW: 78775.1 Da    PI: 5.7321
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.46.2e-1353437071374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPi 90 
                     lv+lLl+cAeavs++d  la+++L +l+  +sp gd+mqR+aa+fteAL+arla + ++  ++ + ++    n       e l++++++++++P+
  XP_011099005.1 343 LVHLLLACAEAVSKEDYMLARKYLHHLNRVVSPLGDSMQRVAACFTEALSARLAATLTNKPSTSNLKRF---NpippdNLEILKIYQILYQACPY 434
                     68****************************************************954444333333333...223355999************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     +kf+h+taNqaI ea+e eervHiiD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++
  XP_011099005.1 435 IKFAHFTANQAIFEAFEAEERVHIIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPESVRETGRCLTELAHSLHVPFEFHP-VGEE 524
                     ***********************************************************....9**************************.7*** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ledl++++++ + gEalaVn+v +lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s 
  XP_011099005.1 525 LEDLKPHMFNRRVGEALAVNSVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSA 613
                     ****************************9..44444....5****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+kvE++++++ei+n+va+eg er++rhe+lekWr+ +e  GF+ vpls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  XP_011099005.1 614 QRAKVEQHIFAPEIRNIVAQEGPERTMRHERLEKWRKVMEGKGFQGVPLSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRSILAASAWR 707
                     *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.658317687IPR005202Transcription factor GRAS
PfamPF035142.1E-132343707IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MGSLTKGESG SISTEIGNLK ISLPSAKTEN SCTKQEPTSS SDGSSVCQIN KTSSSSDFET  60
HSLAHTNLNT LIPVPNLNTL TPTTLTIPAL KFEENGDIEI QSPDYSLWES IFSDQLEGEF  120
MVCSPQASNL YNYNCNYTHQ AMHGQCLVAC SPPRFSSPLG PHKGKGLSPL HRVFNSPNNQ  180
FMHVDQVESL SLPALDSLLD DTYDKDDNFM VFSPMKLTGG GEVSTDCYNT LTAVPELLEC  240
LTMPNSTRFC QQDQANSVQG SSQMSQESGI YQVGTIATQP LSQQLQQERQ QEQEQHLAPR  300
IPPARIQKQQ QQLHQQNQLQ NMHNTLMLPI LAPEEEQDSG LQLVHLLLAC AEAVSKEDYM  360
LARKYLHHLN RVVSPLGDSM QRVAACFTEA LSARLAATLT NKPSTSNLKR FNPIPPDNLE  420
ILKIYQILYQ ACPYIKFAHF TANQAIFEAF EAEERVHIID LDILQGYQWP AFMQALAARP  480
GGAPFLRITG VGPSPESVRE TGRCLTELAH SLHVPFEFHP VGEELEDLKP HMFNRRVGEA  540
LAVNSVNRLH RVPGNCLGNL LAMIRDQAPN IVTIVEQEAS HNGPYFLGRF LEALHYYSAI  600
FDSLDATFPP DSAQRAKVEQ HIFAPEIRNI VAQEGPERTM RHERLEKWRK VMEGKGFQGV  660
PLSSNAVTQS KILLGLYSCD GYRLTEDKGC LLLGWQDRSI LAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-9935070626378Protein SCARECROW
5b3h_A1e-9935070625377Protein SCARECROW
5b3h_D1e-9935070625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099005.10.0DELLA protein RGL2-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2G9HPL00.0A0A2G9HPL0_9LAMI; Uncharacterized protein
STRINGMigut.F00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.18e-98GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]