PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 904aa MW: 102674 Da PI: 8.4587 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.1 | 1.7e-12 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l+ + G +W+ +++ g+ R++k+c++rw +yl XP_011098995.1 14 RGPWTMEEDHKLITFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++ XP_011098995.1 67 RGELSEMEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 67889*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.122 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-7 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-10 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.19E-5 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.035 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.26E-11 | 71 | 110 | No hit | No description |
Hamap | MF_01820 | 30.358 | 328 | 647 | IPR004881 | Ribosome biogenesis GTPase RsgA, putative |
SuperFamily | SSF50249 | 2.33E-6 | 328 | 402 | IPR012340 | Nucleic acid-binding, OB-fold |
Gene3D | G3DSA:2.40.50.140 | 3.2E-4 | 329 | 398 | IPR012340 | Nucleic acid-binding, OB-fold |
TIGRFAMs | TIGR00157 | 6.2E-35 | 375 | 518 | IPR004881 | Ribosome biogenesis GTPase RsgA, putative |
Pfam | PF03193 | 9.9E-58 | 398 | 584 | IPR010914 | RsgA type GTPase domain |
Gene3D | G3DSA:3.40.50.300 | 6.0E-50 | 402 | 583 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS51721 | 41.826 | 402 | 582 | IPR030378 | Circularly permuted (CP)-type guanine nucleotide-binding (G) domain |
SuperFamily | SSF52540 | 3.1E-46 | 405 | 647 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50936 | 41.83 | 411 | 580 | IPR010914 | RsgA type GTPase domain |
CDD | cd01854 | 1.20E-80 | 411 | 641 | No hit | No description |
Gene3D | G3DSA:1.10.40.50 | 1.4E-15 | 586 | 647 | No hit | No description |
Gene3D | G3DSA:3.40.50.300 | 7.9E-6 | 650 | 673 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF06155 | 1.3E-18 | 797 | 873 | IPR010376 | Domain of unknown function DUF971 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003924 | Molecular Function | GTPase activity | ||||
GO:0005525 | Molecular Function | GTP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MGRQPCCDKV GLKRGPWTME EDHKLITFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGEL SEMEENQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLRLLG 120 IDPLTHHPIH PKQNVDHEQK TESELIKRSL GNEEEKVSDH QNAAELMITA EAEIEKSDES 180 SAVHLINNYE MMCRSHDMDL WVRNQNSNYS TNCYSNEDSA VSVSYHNSTA AESSNVSIHE 240 ESSTSGDLQK WVESKLPHFL STGFLCQQRF ISAAARHHQN PINVRRQHQH QQPQKNLLRA 300 RETFKKQFSA LAPTLSPDDE LPLTENQAVG TVASSQANFM RVVVNSASQP EDSASLGVEL 360 LCVVKAVLKK IRRRVLVGDK VLVGSIDWVD RRGMIENVFQ RKSEILDPPV ANVDHLLVLF 420 SLEQPKIEPF MLTRFLVEAE STGIPLTLAL NKAELVDEST LVEWKSRLRG WGYEPVLCSV 480 DTKRGLDTLQ FILRDQTSVI VGPSGVGKSS LINALRGNKS VLAATEEDNW FEPILGSKWF 540 EEQRVGEVST RSGRGKHTTR NVSLLPLSGG GYLADTPGFN QPSLMKVTKQ SLPQYFPEIQ 600 KMLKDNGPGK CSFSDCLHLG EPGCLVKGDW ERYAYYLQLL DEIKIREEFQ LRTVGTKRES 660 DVRLKVGELG VKQAEPRLEP KKHRRQSRKK VNQSILDELD ELDDDDEMLD GDYPVRADLS 720 AMPLSHEYQL SVSEVYTEKH CKHIKGPIPP YHLGQIVPRP TLAEGGEMKR TVDSAIRSVK 780 TVAECPRLTK FSLHAPKIVE VEFDNGSAYN LPAEYLRIYS PAVDSKIRSI RGEKVISGRR 840 HVGIMSAEPV GNYGVRLLFD DLHKTGIFTW DYFYHLGSNK FSLMRNYIQT LKKHGLSRDP 900 PRKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1t9h_A | 1e-39 | 330 | 647 | 13 | 304 | Probable GTPase engC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | RIKKRLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098995.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098809.1 | 0.0 | uncharacterized protein LOC105177379 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-76 | myb domain protein 40 |