PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098995.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 904aa    MW: 102674 Da    PI: 8.4587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-121461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+  +   G  +W+ +++  g+ R++k+c++rw +yl
   XP_011098995.1 14 RGPWTMEEDHKLITFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding50.74.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  ++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++
   XP_011098995.1  67 RGELSEMEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      67889*****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.122961IPR017930Myb domain
SuperFamilySSF466891.8E-2611108IPR009057Homeodomain-like
SMARTSM007176.6E-71363IPR001005SANT/Myb domain
PfamPF002492.2E-101461IPR001005SANT/Myb domain
CDDcd001678.19E-51661No hitNo description
PROSITE profilePS5129425.03562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2365116IPR009057Homeodomain-like
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1467110IPR001005SANT/Myb domain
CDDcd001674.26E-1171110No hitNo description
HamapMF_0182030.358328647IPR004881Ribosome biogenesis GTPase RsgA, putative
SuperFamilySSF502492.33E-6328402IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1403.2E-4329398IPR012340Nucleic acid-binding, OB-fold
TIGRFAMsTIGR001576.2E-35375518IPR004881Ribosome biogenesis GTPase RsgA, putative
PfamPF031939.9E-58398584IPR010914RsgA type GTPase domain
Gene3DG3DSA:3.40.50.3006.0E-50402583IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5172141.826402582IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domain
SuperFamilySSF525403.1E-46405647IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5093641.83411580IPR010914RsgA type GTPase domain
CDDcd018541.20E-80411641No hitNo description
Gene3DG3DSA:1.10.40.501.4E-15586647No hitNo description
Gene3DG3DSA:3.40.50.3007.9E-6650673IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF061551.3E-18797873IPR010376Domain of unknown function DUF971
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTME EDHKLITFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGEL SEMEENQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLRLLG  120
IDPLTHHPIH PKQNVDHEQK TESELIKRSL GNEEEKVSDH QNAAELMITA EAEIEKSDES  180
SAVHLINNYE MMCRSHDMDL WVRNQNSNYS TNCYSNEDSA VSVSYHNSTA AESSNVSIHE  240
ESSTSGDLQK WVESKLPHFL STGFLCQQRF ISAAARHHQN PINVRRQHQH QQPQKNLLRA  300
RETFKKQFSA LAPTLSPDDE LPLTENQAVG TVASSQANFM RVVVNSASQP EDSASLGVEL  360
LCVVKAVLKK IRRRVLVGDK VLVGSIDWVD RRGMIENVFQ RKSEILDPPV ANVDHLLVLF  420
SLEQPKIEPF MLTRFLVEAE STGIPLTLAL NKAELVDEST LVEWKSRLRG WGYEPVLCSV  480
DTKRGLDTLQ FILRDQTSVI VGPSGVGKSS LINALRGNKS VLAATEEDNW FEPILGSKWF  540
EEQRVGEVST RSGRGKHTTR NVSLLPLSGG GYLADTPGFN QPSLMKVTKQ SLPQYFPEIQ  600
KMLKDNGPGK CSFSDCLHLG EPGCLVKGDW ERYAYYLQLL DEIKIREEFQ LRTVGTKRES  660
DVRLKVGELG VKQAEPRLEP KKHRRQSRKK VNQSILDELD ELDDDDEMLD GDYPVRADLS  720
AMPLSHEYQL SVSEVYTEKH CKHIKGPIPP YHLGQIVPRP TLAEGGEMKR TVDSAIRSVK  780
TVAECPRLTK FSLHAPKIVE VEFDNGSAYN LPAEYLRIYS PAVDSKIRSI RGEKVISGRR  840
HVGIMSAEPV GNYGVRLLFD DLHKTGIFTW DYFYHLGSNK FSLMRNYIQT LKKHGLSRDP  900
PRKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1t9h_A1e-3933064713304Probable GTPase engC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RIKKRLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098809.10.0uncharacterized protein LOC105177379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-76myb domain protein 40