PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098802.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 878aa MW: 99515.6 Da PI: 6.3271

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.7e-22	200	287	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Yn+YA + GFs+rk+ ++sk +g +++r+++C ++g+ + +++ + +++r+etrtgC a+++++++++gk++v+++e+ HnHe++ XP_011098802.1 200 KCYNRYALMEGFSIRKDFVNRSKVTGLVVSRRYTCHRQGYGSIKRDV--NVNKPRKETRTGCLAHMTITRQTNGKYRVIHFETRHNHEFV 287 58*************************************998765..9999*********************************97 PP
2	FAR1	88.7	8.5e-28	335	424	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA +vGFsvrk++ ++sk +g + +r+++C +eg+r+++k+ k +r+r+etr+gC a+l+++++ dg+++vt++e+ HnHel+p XP_011098802.1 335 EFYNAYAGRVGFSVRKDYVNRSKIDGAVASRRYTCFREGYRQKDKRG-LKVKRPRKETRVGCMAQLVISRQADGRYRVTHFEERHNHELVP 424 6*****************************************999.999************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-20	201	287	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.9E-25	335	424	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-26	544	638	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.583	823	859	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	834	861	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.1E-5	834	858	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MDPGVGVGVS SAFEDGIREK DGPNPRVDAD AEQTSEAPNF SCDAEVAFVQ VDASLSQEAS 60 SADKDGMDID SESTYSCLNG SSDENSVDSD GENGYTSQDG SSIDHHSLNK DTENGCQSPK 120 TFSGSGNNGP NIVGKQNDQS PGLSSDNQLG MDADDKHVSQ TTEAPSSASS GSGQVIKDEA 180 GEYVVPKLGV EFESEDHAYK CYNRYALMEG FSIRKDFVNR SKVTGLVVSR RYTCHRQGYG 240 SIKRDVNVNK PRKETRTGCL AHMTITRQTN GKYRVIHFET RHNHEFVTPF TAHLLPSQKR 300 ISFVEAVEAE SAVTPVPDGV PKLGMGFESE DHAYEFYNAY AGRVGFSVRK DYVNRSKIDG 360 AVASRRYTCF REGYRQKDKR GLKVKRPRKE TRVGCMAQLV ISRQADGRYR VTHFEERHNH 420 ELVPACKVRM LRSQKRSVTD QIVESTASGG SNMQPKSLAE LLLTGVGIQD FIYDPIDRET 480 RLTSKRVWNI KPDEPESIHQ YFQSKKLKDP SFFYAVQCDV DDEMTNFFWA DEKMLVDFGD 540 FGDVVCFDST SRINKEWRPL VLFLGINNHR QILVFGAAFL YDDSAQSFKW LFQTFKRAMS 600 GKTPKTIVSD KDAVISEAII SELPETHHRL CTWQIYQNAL KHLSQLVVNS DSFSSDLCGC 660 IYNPDEEDFV NSWKVLLDTY GLWGNEWLHG IFEEREKWAL PYRKHIFSAE IDTALLSEDS 720 ITSLKKYLKP ESHVLQFIKH IGKVVNDWRY KELEANYDMG QHMPRLMGDV IMLKQVREVY 780 TPVIFKTFHQ EYENCLNIVI NQCIDTVSSV EYKVSTYGQV RQYTVLYSSE DDSVACSCMK 840 FQFVGILCSH ALKVLDYRNI KIVPSQYILK RWTRDARA

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MDPGVGVGVS SAFEDGIREK DGPNPRVDAD AEQTSEAPNF SCDAEVAFVQ VDASLSQEAS  60
SADKDGMDID SESTYSCLNG SSDENSVDSD GENGYTSQDG SSIDHHSLNK DTENGCQSPK  120
TFSGSGNNGP NIVGKQNDQS PGLSSDNQLG MDADDKHVSQ TTEAPSSASS GSGQVIKDEA  180
GEYVVPKLGV EFESEDHAYK CYNRYALMEG FSIRKDFVNR SKVTGLVVSR RYTCHRQGYG  240
SIKRDVNVNK PRKETRTGCL AHMTITRQTN GKYRVIHFET RHNHEFVTPF TAHLLPSQKR  300
ISFVEAVEAE SAVTPVPDGV PKLGMGFESE DHAYEFYNAY AGRVGFSVRK DYVNRSKIDG  360
AVASRRYTCF REGYRQKDKR GLKVKRPRKE TRVGCMAQLV ISRQADGRYR VTHFEERHNH  420
ELVPACKVRM LRSQKRSVTD QIVESTASGG SNMQPKSLAE LLLTGVGIQD FIYDPIDRET  480
RLTSKRVWNI KPDEPESIHQ YFQSKKLKDP SFFYAVQCDV DDEMTNFFWA DEKMLVDFGD  540
FGDVVCFDST SRINKEWRPL VLFLGINNHR QILVFGAAFL YDDSAQSFKW LFQTFKRAMS  600
GKTPKTIVSD KDAVISEAII SELPETHHRL CTWQIYQNAL KHLSQLVVNS DSFSSDLCGC  660
IYNPDEEDFV NSWKVLLDTY GLWGNEWLHG IFEEREKWAL PYRKHIFSAE IDTALLSEDS  720
ITSLKKYLKP ESHVLQFIKH IGKVVNDWRY KELEANYDMG QHMPRLMGDV IMLKQVREVY  780
TPVIFKTFHQ EYENCLNIVI NQCIDTVSSV EYKVSTYGQV RQYTVLYSSE DDSVACSCMK  840
FQFVGILCSH ALKVLDYRNI KIVPSQYILK RWTRDARA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098802.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098802.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011098803.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011098804.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G9GNZ5	0.0	A0A2G9GNZ5_9LAMI; Uncharacterized protein
STRING	Migut.H00048.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1-related sequence 5