PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 44486.1 Da PI: 6.0785 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.7e-10 | 80 | 101 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ rtGtCk+G +C+++H+ XP_011098795.1 80 DCPHYVRTGTCKFGLNCRYNHP 101 5********************9 PP | |||||||
2 | zf-CCCH | 22.3 | 2.3e-07 | 120 | 144 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t +C++f+ G CkyG +C++ H+ XP_011098795.1 120 GTIECKYFSTAGGCKYGKSCRYGHP 144 7889******************886 PP | |||||||
3 | zf-CCCH | 33.5 | 6.9e-11 | 166 | 190 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++r+G C yG+rC ++H++ XP_011098795.1 166 EKECPYYMRNGSCGYGSRCVYHHPE 190 689********************96 PP | |||||||
4 | zf-CCCH | 34.3 | 4e-11 | 305 | 331 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++C+F+H++ XP_011098795.1 305 PGQPECDYFMKTGDCKFRSTCRFHHPK 331 5789*********************96 PP | |||||||
5 | zf-CCCH | 26.2 | 1.4e-08 | 351 | 376 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++Cr++ r G Ck+G C F H+ XP_011098795.1 351 PGRSICRHYERHGLCKFGRACLFDHP 376 6899*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.526 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0096 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-8 | 80 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-4 | 118 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 118 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-5 | 119 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 122 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 162 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.666 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 166 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 169 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 304 | 332 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-7 | 306 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 308 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 350 | 378 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 350 | 377 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-6 | 351 | 376 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 353 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MTTYEDDSQT KPCPDAETEE QEPGFLTPAP LSEDALIERM ESVALKSEDN NDSIVDDDGN 60 KDVAGCENSG LLPLRPYAGD CPHYVRTGTC KFGLNCRYNH PVKKTQQFLK SRDSDSDNFG 120 TIECKYFSTA GGCKYGKSCR YGHPGEESEN TVPELNFLGL PMRLGEKECP YYMRNGSCGY 180 GSRCVYHHPE PTSVAGKRSP NGMDEKFGEP VVSLAENSSV GSLHLSGASK PYQAPWSSHK 240 SSHSVGPYSE NQSSPQWIGE QSEHNGPQGS NYSHQGRNSC TAPTANGCVR KMDGSMQVDE 300 FPERPGQPEC DYFMKTGDCK FRSTCRFHHP KNRTPKVEEC ILNENGLPLR PGRSICRHYE 360 RHGLCKFGRA CLFDHPATHG LPAYPEWPTS GSAVGCDGSG WDY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098795.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098795.1 | 0.0 | zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A022S0R2 | 1e-165 | A0A022S0R2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00041.1.p | 1e-165 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16408 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 4e-86 | C3H family protein |