PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 42289.1 Da PI: 4.3719 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g XP_011098777.1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.54E-32 | 48 | 105 | No hit | No description |
Pfam | PF00847 | 9.1E-14 | 49 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 49 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 49 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 49 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MARKRKAGEE LDDHEKLNPG EGNLASLNEM VKEAAAVVAL GGVKRARKRF VGVRQRPSGR 60 WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPCSP NSSSTPALPS 120 RITNLLLSKL KARNNALAAS SDSTSNSSSS LASLMPSIAQ EREMEYTDEV PDFSEPYFGD 180 FINDPDENFS MENNSLIAAS DYKSLSFESS VIEADSNCQT SEHKVSSELE MENEIEENSA 240 SLEAVDLHFV DEIGSSSSAY SPFEIAEEIS KPLVQDDEPL MLSEAMKRMN YERKFSASLY 300 AFNGINECLK LKLGNRFNRS EQITRLRNAC KLNQEEMMMM ENNVDREGMK GNEDDSLEKE 360 DGELSLWSSI DLPTICFVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 42 | 114 | 7 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098777.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098777.1 | 0.0 | ethylene-responsive transcription factor 10-like | ||||
TrEMBL | A0A4D9BU19 | 1e-144 | A0A4D9BU19_SALSN; EREBP-like factor | ||||
STRING | cassava4.1_008867m | 1e-120 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-23 | related to AP2 11 |