PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21935.9 Da PI: 8.8438 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 57 | 100 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ XP_011098762.1 57 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 100 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-22 | 37 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-11 | 37 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.356 | 38 | 51 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.859 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 57 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.15E-13 | 61 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 64 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTVMPLMRGV LVLLQKKKTL ISDEHLFICG YFDVGLKRTG KSCRLRWLNY LRPDVRRGNI 60 TPEEQLLIME LHAKWGNRWS KIAKHLPGRT DNEIKNYWRT RIQKHIKQAE NFTGQPADHH 120 HHHTNDQAKP NDQASTSQLS SCGPADHAVE SYSPPSFNPN MEAFQGPFPT ESNDNFWSME 180 DLWSMQLLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-18 | 38 | 106 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098762.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554639.1 | 2e-87 | myb-related protein 305 | ||||
Swissprot | P81391 | 3e-74 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A075BMS1 | 1e-85 | A0A075BMS1_SALMI; MYB-related transcription factor | ||||
STRING | Migut.H00102.1.p | 8e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-62 | myb domain protein 21 |
Publications ? help Back to Top | |||
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