PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098760.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 370aa    MW: 42099.3 Da    PI: 6.7547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-13185219136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      +g WT+eEd llv++v+++G + W++Ia++++ gR 
   XP_011098760.1 185 KGQWTPEEDGLLVELVEKHGLRKWSSIAQMLP-GRI 219
                      799*****************************.995 PP
2Myb_DNA-binding591e-18232274145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++rW++eEd +l++a++qlG++ W+ Iar ++ gR+++ +k++w+
   XP_011098760.1 232 KDRWSEEEDRILIEAHRQLGNR-WAEIARSLP-GRSENTIKNHWN 274
                      68********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.926180225IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-14180220IPR009057Homeodomain-like
SuperFamilySSF466894.4E-23183273IPR009057Homeodomain-like
SMARTSM007170.0047184228IPR001005SANT/Myb domain
PfamPF002491.4E-11185219IPR001005SANT/Myb domain
CDDcd001677.55E-10188218No hitNo description
Gene3DG3DSA:1.10.10.605.1E-21225281IPR009057Homeodomain-like
PROSITE profilePS5129426.97227281IPR017930Myb domain
SMARTSM007173.0E-17231279IPR001005SANT/Myb domain
PfamPF002494.6E-16232274IPR001005SANT/Myb domain
CDDcd001672.92E-14234277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDFEVKLGPY AKLFLESPYI PQMDEGFSSS SSNGPAQVLE NLDHHFMVEG SSPNPCHIFY  60
SPFYDPFDPF QSSSGKVLNL EFSTSFGQDN HVHMHGTRFF DVGSRDKSCQ TFMNIDHHQY  120
YQVMSCEALD LQMMSSPDIK YLENGSCLMS LEDGDHDDGK NRSRGGVLMQ KKRKRISKKK  180
SEIVKGQWTP EEDGLLVELV EKHGLRKWSS IAQMLPGRIG XXXXHLKPNI KKDRWSEEED  240
RILIEAHRQL GNRWAEIARS LPGRSENTIK NHWNATKRRQ LSSRKSSKAA KSNSPLQNYI  300
KSVISTNSSD DKGYLEDSSS ASASPAITVA AADESFKLQL QQTSVDAQMH MQFDLQKEMD  360
FMEMLSYGYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-361822811105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554551.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC105177335
TrEMBLA0A2G9HWG51e-122A0A2G9HWG5_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00097.1.p1e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-43myb domain protein 98