PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 42133.5 Da PI: 9.6947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 129 | 174 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_011098642.1 129 RGHWRPSEDAKLRKLVALYGPQNWNLIAQKLE-GRSGKSCRLRWYNQ 174 899*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.3e-16 | 182 | 225 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ E+e+l +a++ +G++ W++I+r ++ gRt++ +k++w+ + XP_011098642.1 182 RAFTEAEEERLMEAHRVYGNR-WALISRLFP-GRTDNAVKNHWHVL 225 689******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.549 | 124 | 179 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-27 | 128 | 222 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-15 | 128 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 129 | 175 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-26 | 130 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-13 | 132 | 173 | No hit | No description |
SMART | SM00717 | 1.0E-13 | 180 | 228 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.702 | 180 | 230 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.9E-14 | 182 | 224 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-20 | 183 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-10 | 183 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MQQHTATNLR QCHQEHAGFA AYKGSNFLID RTVLFPVLSM GFSADAFKDP VHVSEIKSKP 60 RGRGGSMDFS VMKGCNIRVS KDCSNNVQEE VEKAAMGGCS VNFSKINNGK NPSESCKRME 120 RGQTKFRARG HWRPSEDAKL RKLVALYGPQ NWNLIAQKLE GRSGKSCRLR WYNQLDPKIN 180 KRAFTEAEEE RLMEAHRVYG NRWALISRLF PGRTDNAVKN HWHVLTARKY REKPESYVKR 240 ECSTDQQPDL GRRSMEKCSS NSAANFAEMQ SYCGNQVSWS SNDHFIGGIS FVNLYSGCDN 300 KSWHMRRQIE ESSKHMHLSL PYSPVSTSEI SFAAPTSPAS TWFADHYHGS SHFLQKTETP 360 MFIDFLGVGA I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 129 | 229 | 7 | 107 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098642.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098642.2 | 0.0 | myb-related protein A-like isoform X1 | ||||
TrEMBL | A0A2G9GI20 | 1e-107 | A0A2G9GI20_9LAMI; Transcription factor, Myb superfamily |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-66 | myb domain protein 105 |