PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098618.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 398aa MW: 44903 Da PI: 7.0867

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.4e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+d++++s+ XP_011098618.1 15 MLPGFRFHPTDEELVEFYLKRKLQQRALPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGSGFWKATGTDRPIYSS 108 579*************************.89***********9888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg ktdW+mhe+rl XP_011098618.1 109 dGTKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 142 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-58	15	178	IPR003441	NAC domain
PROSITE profile	PS51005	56.974	15	178	IPR003441	NAC domain
Pfam	PF02365	7.9E-26	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDEKHDSDKS SDDFMLPGFR FHPTDEELVE FYLKRKLQQR ALPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TGSGFWKATG TDRPIYSSDG TKCIGLKKSL 120 VFYRGRAAKG MKTDWMMHEF RLPSTTDGAP PPPPPPKKFL DKNLPPTDSW AICRIFKKNN 180 STAQRALSHS WAASLSETAS PDTNFTYNYS GHPTQFNSEN ISSTTENEFQ PVNFADLNIP 240 SFKTITGKPA IFPSPNGDYF PGNLIFSSSE EVSGTSNKST VDLTSMLFNL SPALGSEACK 300 TSESIDFEGS KQQFNGYSVN SSQVMQASIN PEDEQEGFRK NQSITNTHNQ WGNLRTMGFP 360 FSLPSSVPDS WKPTLPWDSP PCPSEISSTN YSTNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDEKHDSDKS SDDFMLPGFR FHPTDEELVE FYLKRKLQQR ALPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TGSGFWKATG TDRPIYSSDG TKCIGLKKSL  120
VFYRGRAAKG MKTDWMMHEF RLPSTTDGAP PPPPPPKKFL DKNLPPTDSW AICRIFKKNN  180
STAQRALSHS WAASLSETAS PDTNFTYNYS GHPTQFNSEN ISSTTENEFQ PVNFADLNIP  240
SFKTITGKPA IFPSPNGDYF PGNLIFSSSE EVSGTSNKST VDLTSMLFNL SPALGSEACK  300
TSESIDFEGS KQQFNGYSVN SSQVMQASIN PEDEQEGFRK NQSITNTHNQ WGNLRTMGFP  360
FSLPSSVPDS WKPTLPWDSP PCPSEISSTN YSTNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-53	1	181	1	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098618.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098618.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2G9I411	0.0	A0A2G9I411_9LAMI; Uncharacterized protein
STRING	Migut.H00918.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	4e-99	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]