PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098554.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 414aa    MW: 47283.4 Da    PI: 7.268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-1876123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
   XP_011098554.1  76 RGPWTPEEDAKILAYVASHGIGNWTSVPQKAGLNRCGKSCRLRWTNYL 123
                      89********************************************97 PP
2Myb_DNA-binding51.52.4e-16130172246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T+eE+e ++++++  G++ W++Ia++++ gRt++++k++w++
   XP_011098554.1 130 DNFTPEEEECILELHRTIGSR-WSLIAKRLP-GRTDNDVKNYWNT 172
                      68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2567126IPR009057Homeodomain-like
PROSITE profilePS5129426.42771127IPR017930Myb domain
SuperFamilySSF466892.13E-3173170IPR009057Homeodomain-like
SMARTSM007176.3E-1575125IPR001005SANT/Myb domain
PfamPF002491.4E-1676123IPR001005SANT/Myb domain
CDDcd001676.98E-1278123No hitNo description
Gene3DG3DSA:1.10.10.606.5E-25127178IPR009057Homeodomain-like
SMARTSM007171.7E-15128176IPR001005SANT/Myb domain
PROSITE profilePS5129419.833128178IPR017930Myb domain
CDDcd001671.30E-11131171No hitNo description
PfamPF002493.8E-15131172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MQLLLNWSPS YMHFMLPHLL NVFLQIYARS LKSHHHYISL PVQSSPPTSF PPYRQKHQVI  60
CPMGRPPCCD KANVKRGPWT PEEDAKILAY VASHGIGNWT SVPQKAGLNR CGKSCRLRWT  120
NYLRPDLKHD NFTPEEEECI LELHRTIGSR WSLIAKRLPG RTDNDVKNYW NTKLKKKLTK  180
MGIDPVTHKP FSQLFSEYGK ISGFPSTRNG NRFLQNSAAN ESIWKAENNR QKIQKPYYDL  240
LNDQKNHPVE TVTKFQAINQ EFIQPHFFSE ASSSDTFSSS NGVMHFSCGP SHSCEPSQVH  300
IVPPSPFLCN EYVLGDSFPS LDNTDQIPEC KYMGMQYLHN DSIPVQESGL IHNFNGDECR  360
ETIMSCQENS PGVLEKCSSI ATSSAADSFV EAILAHDNEM RLQFPHILDE NYDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29761787108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098554.10.0transcription factor MYB35 isoform X2
TrEMBLA0A2G9GJH11e-136A0A2G9GJH1_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00878.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-81MYB family protein