PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098430.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 201aa MW: 21740.1 Da PI: 7.1343

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.9e-43	15	113	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p kf nvhk+FGasnv+kll+++p+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q+ +l++el+ XP_011098430.1 15 PCAACKFLRRKCLPGCIFAPYFPPEEPTKFVNVHKIFGASNVSKLLNEIPPHQREDAVNSLAYEADARLKDPVYGCVGAISVLQRQVLNLQKELD 109 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_011098430.1 110 ATNA 113 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.276	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-43	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MMASSSSSSG YSNPPCAACK FLRRKCLPGC IFAPYFPPEE PTKFVNVHKI FGASNVSKLL 60 NEIPPHQRED AVNSLAYEAD ARLKDPVYGC VGAISVLQRQ VLNLQKELDA TNADLMRFVG 120 NDHNPYHPDP AHVSMNLIIN SNQQRSGNSS RNYGHGFGRR VDFGSGSFDP NSGFSPYSSC 180 PWNTGHPGDQ GPDAGGDSCS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-63	15	118	11	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-63	15	118	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098429.1	1e-148	LOB domain-containing protein 25
Refseq	XP_011098430.1	1e-148	LOB domain-containing protein 25
Swissprot	Q8L8Q3	6e-66	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4CXF4	2e-78	A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRING	XP_009597524.1	4e-79	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-67	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]