PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 37869.8 Da PI: 5.8267 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 178 | 227 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g XP_011098323.1 178 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYQLRG 227 59******9.**********965...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.71E-33 | 177 | 237 | No hit | No description |
PROSITE profile | PS51032 | 23.314 | 178 | 235 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 178 | 236 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-38 | 178 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-33 | 178 | 236 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 179 | 190 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 179 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 201 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGTSTDFWSS GTPFVDSFNG GELMEALEPF MKSASSPPLS SSYTHPSPFP LSSDAYSSTF 60 TTSSSSSSLL HDQYLDPSSC SSSSYPYNSY YSSSQFELNN VYQASTHNYS FGFGENVEYP 120 VGLNQFSTVQ IQDVQVQTGS GSFHVQYPLQ ATGTTAQFLG PRPVSMKQVG APPKPAKLYR 180 GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDK AAYQLRGDSA RLNFPHLRHN 240 GSHIGGEFGE YQPLHASVDA KLQAICQTLA EGKSIDANRC KNSRSKKAVT DKNCKKLEAE 300 SDGSGELSPD SEQMFRELGE EQPGWEMGSL EKYPSYEIDW AAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 177 | 235 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098323.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ073690 | 2e-56 | KJ073690.1 Sesamum indicum clone TilSSR_44891 microsatellite Sesame_44891 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098323.1 | 0.0 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A2G9GIL2 | 1e-125 | A0A2G9GIL2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02912.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-67 | related to AP2 4 |