PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098072.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26543.2 Da    PI: 9.6652
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.32.7e-302574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+++fss+g+lyey+
  XP_011098072.1 25 KRIENTTNRQVTFCKRRGGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box97.42.2e-32931894100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe++kL++ i+++q+++R++lG++++s+ l+eL+++e +Lek+++++RskKnell+++ie +qk+e e++++n++Lr+k+
  XP_011098072.1  93 SNSMSTSEANTQFYQQEATKLRRLIREIQTSNRQILGDGVSSMALRELKNMEGKLEKAISRVRSKKNELLFAEIELMQKREVEVNNANMYLRAKI 187
                     4455599***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_011098072.1 188 AE 189
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.661777IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-391776IPR002100Transcription factor, MADS-box
CDDcd002653.17E-441894No hitNo description
SuperFamilySSF554551.29E-321891IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-321939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003194.1E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-325475IPR002100Transcription factor, MADS-box
PfamPF014861.7E-23100187IPR002487Transcription factor, K-box
PROSITE profilePS5129713.428103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEFPDQESEF SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RGGLLKKAYE LSVLCDAEVA  60
LVVFSSRGRL YEYANNSVRA TIDRYKKATA DSSNSMSTSE ANTQFYQQEA TKLRRLIREI  120
QTSNRQILGD GVSSMALREL KNMEGKLEKA ISRVRSKKNE LLFAEIELMQ KREVEVNNAN  180
MYLRAKIAES ERAQLPMTSQ PYDVQNLLPV NLLQPNDHHY SCQDQTPLQL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B4e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C4e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D4e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A4e-201885168Myocyte-specific enhancer factor 2A
3kov_B4e-201885168Myocyte-specific enhancer factor 2A
3kov_I4e-201885168Myocyte-specific enhancer factor 2A
3kov_J4e-201885168Myocyte-specific enhancer factor 2A
3p57_A4e-201885168Myocyte-specific enhancer factor 2A
3p57_B4e-201885168Myocyte-specific enhancer factor 2A
3p57_C4e-201885168Myocyte-specific enhancer factor 2A
3p57_D4e-201885168Myocyte-specific enhancer factor 2A
3p57_I4e-201885168Myocyte-specific enhancer factor 2A
3p57_J4e-201885168Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098072.11e-171floral homeotic protein AGAMOUS
SwissprotQ93XH41e-115MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2G9GSS51e-144A0A2G9GSS5_9LAMI; MADS box transcription factor
STRINGXP_009762632.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.18e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]