PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098014.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 288aa    MW: 33047.7 Da    PI: 5.3617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-072974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT eE +l+ +a ++  +     ++ +a++++  ++  ++k+++q 
   XP_011098014.1 29 EWTSEENKLFENALAEIDPAspaFFEHVASRVP-WKSIQEIKNHYQA 74
                     7*****************77*************.***********95 PP
2Myb_DNA-binding45.61.6e-14130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + +++G+g+W++I+r+   ++t+ q+ s+ qky
   XP_011098014.1 130 PWTEEEHQLFLMGLNKYGKGDWRSISRYYVITKTPTQVASHAQKY 174
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.252276IPR017877Myb-like domain
SMARTSM007171.5E-52678IPR001005SANT/Myb domain
CDDcd001670.002142976No hitNo description
SuperFamilySSF466892.83E-72982IPR009057Homeodomain-like
PfamPF002496.9E-62974IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-11123181IPR009057Homeodomain-like
PROSITE profilePS5129420.026123179IPR017930Myb domain
SuperFamilySSF466891.22E-16124179IPR009057Homeodomain-like
SMARTSM007179.0E-13127177IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.5E-17127178IPR006447Myb domain, plants
CDDcd001671.11E-10130175No hitNo description
PfamPF002493.2E-13130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEWSDFHYSP LEESLCGLLS PQFEMDKAEW TSEENKLFEN ALAEIDPASP AFFEHVASRV  60
PWKSIQEIKN HYQALVEDVE MIESGHFPLP NYQNLDDHEK QEEMEAKKED GSPSVEAKTR  120
NGQQRRRGVP WTEEEHQLFL MGLNKYGKGD WRSISRYYVI TKTPTQVASH AQKYFRRQTS  180
STPVDRRRPS IHDIQTVNPT TFASVPQRHA ANNTHPDMDE PIPFSSCSFI PMLNHNFNGG  240
GINVEQNPMF LPPVNSTSFP SADPLFNQTS AAYPAPYMLP SFRNQQWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-12301031184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098014.10.0transcription factor SRM1-like
SwissprotQ9FNN62e-52SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A022RKM81e-126A0A022RKM8_ERYGU; Uncharacterized protein
STRINGMigut.L00854.1.p1e-133(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-55MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]