PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097970.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 1153aa    MW: 127301 Da    PI: 5.8297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-1554101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+l++av ++G ++W +I +  g+ R +k+c++rw++yl
   XP_011097970.1  54 KGAWSKEEDEKLKRAVDEYGVRNWVAIEKFSGLARPAKNCRLRWLNYL 101
                      79********************************************97 PP
2Myb_DNA-binding46.49.2e-15109150346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eE+ l++d++ ++G+  W++Ia++++ gR+++++k++w+k
   XP_011097970.1 109 PFTLEEENLILDLHSKYGNS-WSRIASKLP-GRSDNEIKNFWHK 150
                      79****************99.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.86448101IPR017930Myb domain
SuperFamilySSF466895.62E-2853148IPR009057Homeodomain-like
SMARTSM007171.2E-1353103IPR001005SANT/Myb domain
PfamPF002496.8E-1454101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-1955108IPR009057Homeodomain-like
CDDcd001673.12E-1156101No hitNo description
PROSITE profilePS5129422.775102156IPR017930Myb domain
SMARTSM007171.5E-13106154IPR001005SANT/Myb domain
PfamPF002493.6E-13109150IPR001005SANT/Myb domain
CDDcd001671.13E-11109150No hitNo description
Gene3DG3DSA:1.10.10.603.0E-22109154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MAVDCHPLTP CTSGMESREG GDHAHRVESI EPPTTTGSEK AEVEMEAGPV VYKKGAWSKE  60
EDEKLKRAVD EYGVRNWVAI EKFSGLARPA KNCRLRWLNY LRPNLKKYPF TLEEENLILD  120
LHSKYGNSWS RIASKLPGRS DNEIKNFWHK RAKKCQKHHL PIYPTAQEEQ QQQQQSHTHV  180
SNKNLNADQA NANANANANE DYFPNIPTNY PNHTLPSTSN IHSPEFQPNL LNTSSHPTNS  240
SSIVHSPQSL NPTPQLPQFV PPGSLASPHK QSPASQLTDQ TPLLPNTPTS QTQNLLISPQ  300
QHSQLTDTAP HVQGPLLWQD GSSSNTFTPL RKPPILSSPD SCLRRFSRAT NQLPPTDNVS  360
GSTHSVVNAS PFLPSDPSLQ IPWSSPAESP RSLLKLKLSA GGPASYSVHM STQTTDAPVA  420
SLSAFQLKPP TPPLSPLKLR LSIPIHSESG FQLHSSIPDS TAPVSAPQLK PSSCSQDLPT  480
IQPMSLDANR SIPLNSSLDV TNMPPSIQFY QPAMPEMNSS THEVESDSHL EIMDELREAE  540
ARVRFLKNKL KERTNPNKTT LIKESSRKEQ FFGEDQETTD LYGRGMKAVL LDGNSSQRTI  600
KDCLSRTSSK TQSFIEEILR VSEPTNNSRT NETLKRTRSC DMIGVSETAT LQITSDMEEN  660
RLCKLQKTGN SESGKRTQES TDLEQVTQSE NAETKILMDE RLQREDLLSE IFKRESSATS  720
QEQRHSIAFF DHPNNQNAVS APNSDSWCNK PCHFQLPAGQ RLEECSITEG LFSQSSTVSP  780
DSFLKGVHVH LIDAFTPVYS QSTATTLVEP GNDSRSYLHH EEGGCFSDSL GREFSDGLGK  840
KFTEAGLMGG NLPATSMLCQ SNLLMHQYPT ANVQDSSYLD SKSMMEQESL GGEQFSLQAS  900
SKGNSAESLR LCGSSLLLHQ HQAANLLDSS YLVEQESPGG GQFSLQTSGG GNLGGTSKLS  960
ESTLLLHQHC AANLVDSRFT VGFQHECLPS GQYSVQTSSA GGFYEGDMKM EHKSGETWEQ  1020
QPSREHSLLD SLLVENLWPG GHSHDQTLST NRVDSVVEPS TKTHLTESKN WNGESGCSHT  1080
GEVLKQEHEQ DHMNMPDELS SLLEFFPTTI HTLEWYNNCN AIHDVEASNE YDMGLGLHMS  1140
STSQSLMTIA DFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23541547106B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1631636ETLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0417229e-65KJ041722.1 Sesamum indicum clone TilSSR_12923 microsatellite Sesame_12923 sequence.
GenBankKJ0589819e-65KJ058981.1 Sesamum indicum clone TilSSR_30182 microsatellite Sesame_30182 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097970.10.0uncharacterized protein LOC105176765
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2287222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.11e-41myb domain protein 97