PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097940.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 541aa    MW: 60562.8 Da    PI: 5.6034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.13.7e-1281715401373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s+++l++ ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al++se +   s++ l+++++++e++P++kf++
  XP_011097940.1 171 LKHLLISCARALSEDKLNEFEELVKHARAAVSISGEPIQRLGAYMLEGLIARKELSGTHIYHALKCSELD---SKDLLSYMRILYEICPYYKFGY 262
                     689**************************************************99**************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea ++e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +Ri g+++p s+  + + l ++++r + + ++ ++p+ef++ v     d
  XP_011097940.1 263 MAANGAIAEACKNEDRIHIIDFQIAQGTQWITLLQALAARPGGAPGVRISGIDDPFSEyaRGDGLAAVRKRFEAISKKYNIPVEFHA-VPVFALD 356
                     ******************************************************9988999**************************.5777788 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++Fl+rf+e+l+yy a+f+s+++++pre +eri
  XP_011097940.1 357 VTRNMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLSPKVVTLVEQESNTNTAPFLARFTETLDYYLAMFESIDVTMPREGKERI 451
                     99********************************************************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+reivnv+aceg++r+erhe ++kWr+r+++aGF+++pls+++++ ++ llr ++ + y++ e++g ++lgWkdr+L+s+SaW
  XP_011097940.1 452 NVEQQCLAREIVNVIACEGKARVERHELFGKWRSRFMMAGFRQLPLSSYVNSVIRGLLRCYS-EHYTLLEKDGGMLLGWKDRNLISASAW 540
                     **********************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.443145522IPR005202Transcription factor GRAS
PfamPF035141.3E-125171540IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDSHYLGYEV AGAGLAYSSY TSASSMPPGL FRSSKLDSRN LPSFPFSTPY DPETLATYGV  60
SWDPDGLAYN PSGATLYSNS LLDYNNCLQQ PAPSPFCPQD SSLVCSNDPS FPQNVNGNHH  120
IRQALWELES ALMDADDYSR PGSWNDEQHI EKCCRAMEDF AMLPVIPTDN LKHLLISCAR  180
ALSEDKLNEF EELVKHARAA VSISGEPIQR LGAYMLEGLI ARKELSGTHI YHALKCSELD  240
SKDLLSYMRI LYEICPYYKF GYMAANGAIA EACKNEDRIH IIDFQIAQGT QWITLLQALA  300
ARPGGAPGVR ISGIDDPFSE YARGDGLAAV RKRFEAISKK YNIPVEFHAV PVFALDVTRN  360
MLDIRPGEAL AVNFPLQLHH TPDESVDVSN PRDGLLRMVK SLSPKVVTLV EQESNTNTAP  420
FLARFTETLD YYLAMFESID VTMPREGKER INVEQQCLAR EIVNVIACEG KARVERHELF  480
GKWRSRFMMA GFRQLPLSSY VNSVIRGLLR CYSEHYTLLE KDGGMLLGWK DRNLISASAW  540
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-601755418375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097940.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2Z7DEX90.0A0A2Z7DEX9_9LAMI; Chitin-inducible gibberellin-responsive protein 1-like
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-168GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]