PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097799.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 293aa    MW: 32887.2 Da    PI: 8.1616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.77.3e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd++l  +++q+G+++W++I+++ g+ R++k+c++rw +yl
   XP_011097799.1 14 RGQWTPEEDQKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding32.71.7e-1066921846
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqk 46
                      lG++ W+ Ia+ ++ gRt++++k++w++
   XP_011097799.1 66 VLGNR-WSVIAAQLP-GRTDNDVKNHWNT 92
                     69*99.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129426.791965IPR017930Myb domain
SMARTSM007179.2E-151363IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-271495IPR009057Homeodomain-like
PfamPF002492.7E-181461IPR001005SANT/Myb domain
CDDcd001679.58E-131761No hitNo description
SMARTSM007171.86496IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1366105IPR009057Homeodomain-like
PROSITE profilePS512947.1136698IPR017930Myb domain
PfamPF002493.3E-86692IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRVPCCEKE NVKRGQWTPE EDQKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY  60
LRPHSVLGNR WSVIAAQLPG RTDNDVKNHW NTKLKKKLSG MGIDPVTHKP FSHLITEIAT  120
LPPPQAPNLA EAALGCFKDE MLHLLTKRRI DIQLQQFSTT PSSTNTCIKH EDSKDETIEK  180
IKFGLSKAMK EPEMMPMNKP WERVEGTSAY LGGSFNSFPG PESSFQYELG SLGNEGDASP  240
WSQSMCTGST CTAADQRTRL HEKLEDEDAG SGKETRNGSN IFNSDCSIWD LPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2314987108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7800793e-55KR780079.1 Rehmannia glutinosa R2R3-MYB protein (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554535.10.0transcription factor MYB80
SwissprotQ7XQN19e-99MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A0K1SB771e-176A0A0K1SB77_REHGL; R2R3-MYB protein
STRINGVIT_19s0015g01280.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-96myb domain protein 103