PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097798.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 406aa    MW: 45597.9 Da    PI: 6.6956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.42.3e-113394052373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lL++cAe vs +dl++a++l++ l + +sp gd+++Rl++ ft+AL+ rl   + ++ ++a ++s+++  + +++l   ++  +++v+P+++f
  XP_011097798.1  39 RQLLISCAELVSRSDLSAAHRLITVLATSSSPFGDSTERLVHQFTRALSLRLDFlMNPNPAAAAAASSQDLGSADDALIQSSYlsLNQVTPFVRF 133
                     89*************************************************9984445444444333333333333332222246********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrle 187
                     ++ltaNqaIlea++g++++Hi+Dfdi++G+QWp+Llqa a+R  +pp+lRiT+ gs    ++e l++tg+rLa+fA++lg++f+f++l + ++ +
  XP_011097798.1 134 CQLTANQAILEATDGQKAIHILDFDIMHGVQWPPLLQAVAER-YPPPTLRITATGS----DREILRRTGDRLARFAHSLGLRFQFHPLiLLSNQD 223
                     *****************************************9.999**********....9**************************95334555 PP

            GRAS 188 dlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF.lerflealeyysalfdsleaklprese 280
                      +++ ++  ++++E+laVn+v  lhrll++   l      +L+ +ks+sPkv++v+++++      F  +rf+eal++y+a+fdslea+lp++s 
  XP_011097798.1 224 PISItSSVLLRHDETLAVNCVNYLHRLLKDCNRLLL----FLQRIKSMSPKVLTVADHNLPI----FrQQRFVEALDHYAAVFDSLEATLPPNSP 310
                     554415666888****************66666666....***************9877766....51479************************ PP

            GRAS 281 erikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     er  vE+ ++grei ++va  g + rrerhe++ +W ++l+ aGF++ pls +a +qaklllr ++ s+gy+++  ++sl+l W+++pL+svS+W
  XP_011097798.1 311 ERLAVEQIWFGREIADIVAGDGGDnRRERHERFTSWAAMLRCAGFSNTPLSPFALSQAKLLLRLHYpSEGYQLHILDESLFLAWQNQPLFSVSSW 405
                     *******************887655********************************************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.95812385IPR005202Transcription factor GRAS
PfamPF035148.0E-11139405IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLGSFDSSSH DDDEEEPPPN AYIHQTRHRS LVPPPVHIRQ LLISCAELVS RSDLSAAHRL  60
ITVLATSSSP FGDSTERLVH QFTRALSLRL DFLMNPNPAA AAAASSQDLG SADDALIQSS  120
YLSLNQVTPF VRFCQLTANQ AILEATDGQK AIHILDFDIM HGVQWPPLLQ AVAERYPPPT  180
LRITATGSDR EILRRTGDRL ARFAHSLGLR FQFHPLILLS NQDPISITSS VLLRHDETLA  240
VNCVNYLHRL LKDCNRLLLF LQRIKSMSPK VLTVADHNLP IFRQQRFVEA LDHYAAVFDS  300
LEATLPPNSP ERLAVEQIWF GREIADIVAG DGGDNRRERH ERFTSWAAML RCAGFSNTPL  360
SPFALSQAKL LLRLHYPSEG YQLHILDESL FLAWQNQPLF SVSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-604540526378Protein SCARECROW
5b3h_A6e-604540525377Protein SCARECROW
5b3h_D6e-604540525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097798.10.0scarecrow-like protein 18
RefseqXP_020554407.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-115SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2Z7BPN50.0A0A2Z7BPN5_9LAMI; Scarecrow-like protein 18-like
STRINGXP_009618056.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-114GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]