PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011097798.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 406aa MW: 45597.9 Da PI: 6.6956 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370.4 | 2.3e-113 | 39 | 405 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkf 93 ++lL++cAe vs +dl++a++l++ l + +sp gd+++Rl++ ft+AL+ rl + ++ ++a ++s+++ + +++l ++ +++v+P+++f XP_011097798.1 39 RQLLISCAELVSRSDLSAAHRLITVLATSSSPFGDSTERLVHQFTRALSLRLDFlMNPNPAAAAAASSQDLGSADDALIQSSYlsLNQVTPFVRF 133 89*************************************************9984445444444333333333333332222246********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrle 187 ++ltaNqaIlea++g++++Hi+Dfdi++G+QWp+Llqa a+R +pp+lRiT+ gs ++e l++tg+rLa+fA++lg++f+f++l + ++ + XP_011097798.1 134 CQLTANQAILEATDGQKAIHILDFDIMHGVQWPPLLQAVAER-YPPPTLRITATGS----DREILRRTGDRLARFAHSLGLRFQFHPLiLLSNQD 223 *****************************************9.999**********....9**************************95334555 PP GRAS 188 dlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF.lerflealeyysalfdsleaklprese 280 +++ ++ ++++E+laVn+v lhrll++ l +L+ +ks+sPkv++v+++++ F +rf+eal++y+a+fdslea+lp++s XP_011097798.1 224 PISItSSVLLRHDETLAVNCVNYLHRLLKDCNRLLL----FLQRIKSMSPKVLTVADHNLPI----FrQQRFVEALDHYAAVFDSLEATLPPNSP 310 554415666888****************66666666....***************9877766....51479************************ PP GRAS 281 erikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 er vE+ ++grei ++va g + rrerhe++ +W ++l+ aGF++ pls +a +qaklllr ++ s+gy+++ ++sl+l W+++pL+svS+W XP_011097798.1 311 ERLAVEQIWFGREIADIVAGDGGDnRRERHERFTSWAAMLRCAGFSNTPLSPFALSQAKLLLRLHYpSEGYQLHILDESLFLAWQNQPLFSVSSW 405 *******************887655********************************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.958 | 12 | 385 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-111 | 39 | 405 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MLGSFDSSSH DDDEEEPPPN AYIHQTRHRS LVPPPVHIRQ LLISCAELVS RSDLSAAHRL 60 ITVLATSSSP FGDSTERLVH QFTRALSLRL DFLMNPNPAA AAAASSQDLG SADDALIQSS 120 YLSLNQVTPF VRFCQLTANQ AILEATDGQK AIHILDFDIM HGVQWPPLLQ AVAERYPPPT 180 LRITATGSDR EILRRTGDRL ARFAHSLGLR FQFHPLILLS NQDPISITSS VLLRHDETLA 240 VNCVNYLHRL LKDCNRLLLF LQRIKSMSPK VLTVADHNLP IFRQQRFVEA LDHYAAVFDS 300 LEATLPPNSP ERLAVEQIWF GREIADIVAG DGGDNRRERH ERFTSWAAML RCAGFSNTPL 360 SPFALSQAKL LLRLHYPSEG YQLHILDESL FLAWQNQPLF SVSSWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-60 | 45 | 405 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-60 | 45 | 405 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-60 | 45 | 405 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011097798.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097798.1 | 0.0 | scarecrow-like protein 18 | ||||
Refseq | XP_020554407.1 | 0.0 | scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-115 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A2Z7BPN5 | 0.0 | A0A2Z7BPN5_9LAMI; Scarecrow-like protein 18-like | ||||
STRING | XP_009618056.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11298 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-114 | GRAS family protein |
Publications ? help Back to Top | |||
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