PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097794.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 427aa MW: 47688.2 Da PI: 6.4216

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	445.2	4.4e-136	57	426	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+e L++cA+ v+++dl + ++++l+ ++s g+p+qRl ay++e+L arl++s+s++ykal+++e + s e l++++l++e++P++kf++ XP_011097794.1 57 LKEMLVACAKSVADNDLFTSELFMSELRLMVSVCGEPLQRLGAYMLEGLVARLSSSGSSIYKALRCKEPT---SPELLSYMHLLYEICPYFKFGY 148 5789***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 l aN aI ea+++e+r+HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTgv++p s + le +g+rL+++A+++gvpfef+ l a + d XP_011097794.1 149 LSANGAIAEAMKNETRIHIIDFQIAQGSQWITLIQALATRPGGPPQMRITGVDDPVSAyaRGGGLEIVGQRLSRLAKSCGVPFEFHGL-AISGCD 242 ***************************************************99999999********************6.777899 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 le ++L+++ gEal+Vn++++lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n+++F+ rf+e+leyy a+f+s+++ l+re++eri XP_011097794.1 243 LERKHLKIQAGEALVVNFAMMLHHMPDESVSIENHRDRLLRMVKNLSPKVVTLVEQESNTNTAPFVLRFIETLEYYLAIFESIDVALSRENKERI 337 9****************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+++l+r+ivnv+aceg er+erhe lekWr+r+ +aGF+p pls+++++++k ll+++++ yr+ e +g+l+lgW++r+Lv+ +aW XP_011097794.1 338 NVEQHCLARDIVNVIACEGPERVERHELLEKWRRRFAMAGFSPFPLSSFVNSTIKNLLKNYSGS-YRLVEGDGCLYLGWMNRNLVASCAW 426 **********************************************************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.015	31	408	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-133	57	426	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MACSLDCEND LENKLGELRP LQPILGPDSR GVGAGSQFSI EPQLSKEAMD IIQCKNLKEM 60 LVACAKSVAD NDLFTSELFM SELRLMVSVC GEPLQRLGAY MLEGLVARLS SSGSSIYKAL 120 RCKEPTSPEL LSYMHLLYEI CPYFKFGYLS ANGAIAEAMK NETRIHIIDF QIAQGSQWIT 180 LIQALATRPG GPPQMRITGV DDPVSAYARG GGLEIVGQRL SRLAKSCGVP FEFHGLAISG 240 CDLERKHLKI QAGEALVVNF AMMLHHMPDE SVSIENHRDR LLRMVKNLSP KVVTLVEQES 300 NTNTAPFVLR FIETLEYYLA IFESIDVALS RENKERINVE QHCLARDIVN VIACEGPERV 360 ERHELLEKWR RRFAMAGFSP FPLSSFVNST IKNLLKNYSG SYRLVEGDGC LYLGWMNRNL 420 VASCAWI

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MACSLDCEND LENKLGELRP LQPILGPDSR GVGAGSQFSI EPQLSKEAMD IIQCKNLKEM  60
LVACAKSVAD NDLFTSELFM SELRLMVSVC GEPLQRLGAY MLEGLVARLS SSGSSIYKAL  120
RCKEPTSPEL LSYMHLLYEI CPYFKFGYLS ANGAIAEAMK NETRIHIIDF QIAQGSQWIT  180
LIQALATRPG GPPQMRITGV DDPVSAYARG GGLEIVGQRL SRLAKSCGVP FEFHGLAISG  240
CDLERKHLKI QAGEALVVNF AMMLHHMPDE SVSIENHRDR LLRMVKNLSP KVVTLVEQES  300
NTNTAPFVLR FIETLEYYLA IFESIDVALS RENKERINVE QHCLARDIVN VIACEGPERV  360
ERHELLEKWR RRFAMAGFSP FPLSSFVNST IKNLLKNYSG SYRLVEGDGC LYLGWMNRNL  420
VASCAWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-68	59	426	6	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097794.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097794.1	0.0	scarecrow-like transcription factor PAT1 isoform X2
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A4D9AKH1	0.0	A0A4D9AKH1_SALSN; Uncharacterized protein
STRING	AET00925	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]