PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097792.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 535aa MW: 59496.8 Da PI: 5.4926

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	444.1	9.3e-136	165	534	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+e L++cA+ v+++dl + ++++l+ ++s g+p+qRl ay++e+L arl++s+s++ykal+++e + s e l++++l++e++P++kf++ XP_011097792.1 165 LKEMLVACAKSVADNDLFTSELFMSELRLMVSVCGEPLQRLGAYMLEGLVARLSSSGSSIYKALRCKEPT---SPELLSYMHLLYEICPYFKFGY 256 5789***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 l aN aI ea+++e+r+HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTgv++p s + le +g+rL+++A+++gvpfef+ l a + d XP_011097792.1 257 LSANGAIAEAMKNETRIHIIDFQIAQGSQWITLIQALATRPGGPPQMRITGVDDPVSAyaRGGGLEIVGQRLSRLAKSCGVPFEFHGL-AISGCD 350 ***************************************************99999999********************6.777899 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 le ++L+++ gEal+Vn++++lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n+++F+ rf+e+leyy a+f+s+++ l+re++eri XP_011097792.1 351 LERKHLKIQAGEALVVNFAMMLHHMPDESVSIENHRDRLLRMVKNLSPKVVTLVEQESNTNTAPFVLRFIETLEYYLAIFESIDVALSRENKERI 445 9****************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+++l+r+ivnv+aceg er+erhe lekWr+r+ +aGF+p pls+++++++k ll+++++ yr+ e +g+l+lgW++r+Lv+ +aW XP_011097792.1 446 NVEQHCLARDIVNVIACEGPERVERHELLEKWRRRFAMAGFSPFPLSSFVNSTIKNLLKNYSGS-YRLVEGDGCLYLGWMNRNLVASCAW 534 **********************************************************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.015	139	516	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-133	165	534	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MTSQNHDNIA GSGRFVHQPL EELESYLLDP SCNLDHFISC DGESQGIQFP AEIYEQRCRV 60 DSSIASGSYS FYNSPSAVSF SSNVSSSTQP DCVSDTNNSI HDTRLSVSRA CSLDCENDLE 120 NKLGELRPLQ PILGPDSRGV GAGSQFSIEP QLSKEAMDII QCKNLKEMLV ACAKSVADND 180 LFTSELFMSE LRLMVSVCGE PLQRLGAYML EGLVARLSSS GSSIYKALRC KEPTSPELLS 240 YMHLLYEICP YFKFGYLSAN GAIAEAMKNE TRIHIIDFQI AQGSQWITLI QALATRPGGP 300 PQMRITGVDD PVSAYARGGG LEIVGQRLSR LAKSCGVPFE FHGLAISGCD LERKHLKIQA 360 GEALVVNFAM MLHHMPDESV SIENHRDRLL RMVKNLSPKV VTLVEQESNT NTAPFVLRFI 420 ETLEYYLAIF ESIDVALSRE NKERINVEQH CLARDIVNVI ACEGPERVER HELLEKWRRR 480 FAMAGFSPFP LSSFVNSTIK NLLKNYSGSY RLVEGDGCLY LGWMNRNLVA SCAWI

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MTSQNHDNIA GSGRFVHQPL EELESYLLDP SCNLDHFISC DGESQGIQFP AEIYEQRCRV  60
DSSIASGSYS FYNSPSAVSF SSNVSSSTQP DCVSDTNNSI HDTRLSVSRA CSLDCENDLE  120
NKLGELRPLQ PILGPDSRGV GAGSQFSIEP QLSKEAMDII QCKNLKEMLV ACAKSVADND  180
LFTSELFMSE LRLMVSVCGE PLQRLGAYML EGLVARLSSS GSSIYKALRC KEPTSPELLS  240
YMHLLYEICP YFKFGYLSAN GAIAEAMKNE TRIHIIDFQI AQGSQWITLI QALATRPGGP  300
PQMRITGVDD PVSAYARGGG LEIVGQRLSR LAKSCGVPFE FHGLAISGCD LERKHLKIQA  360
GEALVVNFAM MLHHMPDESV SIENHRDRLL RMVKNLSPKV VTLVEQESNT NTAPFVLRFI  420
ETLEYYLAIF ESIDVALSRE NKERINVEQH CLARDIVNVI ACEGPERVER HELLEKWRRR  480
FAMAGFSPFP LSSFVNSTIK NLLKNYSGSY RLVEGDGCLY LGWMNRNLVA SCAWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-66	167	534	6	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097792.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097791.1	0.0	scarecrow-like protein 21 isoform X1
Refseq	XP_011097792.1	0.0	scarecrow-like protein 21 isoform X1
Refseq	XP_011097793.1	0.0	scarecrow-like protein 21 isoform X1
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A4D9AKH1	0.0	A0A4D9AKH1_SALSN; Uncharacterized protein
STRING	AET00925	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]