PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097766.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YB

Protein Properties

Length: 199aa MW: 20836.4 Da PI: 7.7123

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	137.8	2.9e-43	20	112	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqdrflPianvsrimkk+lPanakiskda +t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+++r++ege XP_011097766.1 20 REQDRFLPIANVSRIMKKALPANAKISKDAXXXXXXXX---XXXITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFRDMEGE 111 89**************************98876655...5679***********************************************9 PP NF-YB 97 k 97 k XP_011097766.1 112 K 112 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-40	15	122	IPR009072	Histone-fold
SuperFamily	SSF47113	8.57E-30	22	121	IPR009072	Histone-fold
Pfam	PF00808	3.3E-15	25	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.1E-11	69	87	No hit	No description
PRINTS	PR00615	7.1E-11	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MADSDNESGG HRDHNETSPR EQDRFLPIAN VSRIMKKALP ANAKISKDAX XXXXXXXXXX 60 ITGEASDKCQ REKRKTINGD DLLWAMTTLG FEDYVEPLKI YLQRFRDMEG EKSAMAGKGE 120 KESGGGGGNG NGSVVNMGSS GGGYEGMYMM GHQGGVGVGV GPVYGYGQQM AGGGSGKVGS 180 GYHHVGPGAG AAGASGRPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-34	20	107	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-34	20	107	2	92	Transcription factor HapC (Eurofung)
5g49_A	2e-34	18	107	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097766.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097763.1	1e-132	nuclear transcription factor Y subunit B-3-like
Refseq	XP_011097764.1	1e-132	nuclear transcription factor Y subunit B-3-like
Refseq	XP_011097766.1	1e-132	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	2e-61	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2G9GYA3	3e-82	A0A2G9GYA3_9LAMI; CCAAT-binding factor, subunit A (HAP3)
STRING	Migut.H01757.1.p	2e-73	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-60	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]