PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097593.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 369aa    MW: 40669 Da    PI: 6.6006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20172222256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ kl+ge
  XP_011097593.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAYKLRGE 222
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-33171231No hitNo description
SMARTSM003809.0E-38172235IPR001471AP2/ERF domain
PROSITE profilePS5103223.064172229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32172230IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23172230IPR016177DNA-binding domain
PRINTSPR003676.7E-11173184IPR001471AP2/ERF domain
PfamPF008471.2E-13173222IPR001471AP2/ERF domain
PRINTSPR003676.7E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAAAIDIYGS CSFSTDPFRE ELMQALQPFM KSASPSSSST SLSTSPSPSH PSPSSSSSSS  60
DYFSFPSSCD QPNMYTGFSS VPSRTQIFSP GFSSFSQLGD EQTVSTIGLN QLTPSQILQI  120
QAQFHLQQQQ LQQQQSYKFS QLQHQGNSFS SFLGPKPVLM KQPGTPSKPG KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TFDTAEDAAL AYDKAAYKLR GEFARLNFPH LRHQLCRDSS  240
DFKPLHSSVD AKLQAICQNL ANSQKQGKNS GEEPCSVSKQ EHEIKKSSVP KIESSSDDSS  300
NDGFKETVKV ESSISSSASP SPSEEASWTG SASPESDITL LDFHEPSFDG FDNFLLQKYP  360
SVEIDWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23170229363ATERF1
3gcc_A4e-23170229363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097593.10.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E42e-78RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2G9HN351e-139A0A2G9HN35_9LAMI; Uncharacterized protein
STRINGMigut.L00108.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-54related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]