PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097567.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

CAMTA

Protein Properties

Length: 1111aa MW: 124409 Da PI: 5.9718

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.6	4.6e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL+n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+een++fqr XP_011097567.1 20 LEAQHRWLRPAEICEILQNYKKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leeel++ivlvhy+evk XP_011097567.1 115 RSYWMLEEELSHIVLVHYREVK 136 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	84.506	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.7E-81	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.7E-50	21	134	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.52E-16	531	617	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.4E-18	711	827	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.68E-13	713	824	No hit	No description
PROSITE profile	PS50297	18.431	716	825	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.18E-17	717	827	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.8E-7	738	827	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.2E-4	766	795	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.606	766	798	IPR002110	Ankyrin repeat
SMART	SM00248	1800	805	835	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.45E-8	933	991	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	21	940	962	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	942	970	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.084	942	961	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0018	963	985	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	964	988	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.7E-4	966	985	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1111 aa Download sequence Send to blast
MAESRRYALN AQLDIEQILL EAQHRWLRPA EICEILQNYK KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML 120 EEELSHIVLV HYREVKGNRT NFNRSRNADV IPDSRQTEES ISNSEVDSSA RFQPYDYQGA 180 SQATDTSLNS THASEHEDAE SAYRQQATSG FQPIHELQTP QKTEVGSVPC YPVPISNIYQ 240 GQFSAIPGVS SGSLTDGEKN KDPMDNGLTY QLHGELEFPS WGNVVESSNA GYQSVNFQPS 300 HPSTQSSAMS LMPGQENQLL DQVFTGVLGK KQNFGSHSGG LEEWQASGGD SLNISKWSMD 360 QKSDDNQNLG QNSNYPSLRP PFLFDLTTKL DGVNQVELCH SVELDDAYLT EQSRHPMQND 420 LRLQPLTAVG SSLKLQSDGN PKIDDKTSYP AFRQPLLDGI IGEGLRKLDS FDRWMSKELG 480 DVTESTMQPG SGAYWGTVGS EDGDDTGISS QMPLDNFILG PSLSQDQLFS IIDFSPNWAY 540 SGSEIKVLVM GKFLRSREEV EKYKWACMFG ELEVPAEIVA DGVLRCHTPS HATGRVPFYI 600 TCSNRLACSE VREFEFRSSS IQDVDLADVG SITSDETLLH MRFGKLLSLG SGNSQTSVES 660 NAAEISKLRS KISALLKDDS EWEQMLNLTK QDEFSADKVK DQLLQKLLKE KLHVWLLQKV 720 AEGGKGPNVL DEGGQGVLHF AAALGYDWAI PPTIAAGVSV NFRDANGWTA LHWAAYYGRE 780 RTVAFLISLG AAPEALTDPT PTYPAGRPPA ELAASNGHKG IAGYLSESLL SSLSSHISSL 840 NLEDSKESND RGKSVETVTE RIATPAGYGD LPHGLSMKDS LAAVRNATQA AARIHQVFRV 900 QSFQRKQLEE YGDGEFGMSD ERALSLLALK TKKAGQHDQP VHAAAVRIQN KFRSWKGRKD 960 FLLIRQRIIK IQAHVRGHQV RKNYRKIIWS VGILDKVILR WRRKGRGLSR FRPEALGAGT 1020 SMVDEDDYDF LKEGRKQTEE RLQKALARVK SMVQYPEARD QYRRLLNVVS EMQETKAVYD 1080 KVLNNFEVDY DDDLIDLEAL LDDDTLMQTA S

Sequence ? help Back to Top

Protein Sequence Length: 1111 aa Download sequence Send to blast

MAESRRYALN AQLDIEQILL EAQHRWLRPA EICEILQNYK KFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML  120
EEELSHIVLV HYREVKGNRT NFNRSRNADV IPDSRQTEES ISNSEVDSSA RFQPYDYQGA  180
SQATDTSLNS THASEHEDAE SAYRQQATSG FQPIHELQTP QKTEVGSVPC YPVPISNIYQ  240
GQFSAIPGVS SGSLTDGEKN KDPMDNGLTY QLHGELEFPS WGNVVESSNA GYQSVNFQPS  300
HPSTQSSAMS LMPGQENQLL DQVFTGVLGK KQNFGSHSGG LEEWQASGGD SLNISKWSMD  360
QKSDDNQNLG QNSNYPSLRP PFLFDLTTKL DGVNQVELCH SVELDDAYLT EQSRHPMQND  420
LRLQPLTAVG SSLKLQSDGN PKIDDKTSYP AFRQPLLDGI IGEGLRKLDS FDRWMSKELG  480
DVTESTMQPG SGAYWGTVGS EDGDDTGISS QMPLDNFILG PSLSQDQLFS IIDFSPNWAY  540
SGSEIKVLVM GKFLRSREEV EKYKWACMFG ELEVPAEIVA DGVLRCHTPS HATGRVPFYI  600
TCSNRLACSE VREFEFRSSS IQDVDLADVG SITSDETLLH MRFGKLLSLG SGNSQTSVES  660
NAAEISKLRS KISALLKDDS EWEQMLNLTK QDEFSADKVK DQLLQKLLKE KLHVWLLQKV  720
AEGGKGPNVL DEGGQGVLHF AAALGYDWAI PPTIAAGVSV NFRDANGWTA LHWAAYYGRE  780
RTVAFLISLG AAPEALTDPT PTYPAGRPPA ELAASNGHKG IAGYLSESLL SSLSSHISSL  840
NLEDSKESND RGKSVETVTE RIATPAGYGD LPHGLSMKDS LAAVRNATQA AARIHQVFRV  900
QSFQRKQLEE YGDGEFGMSD ERALSLLALK TKKAGQHDQP VHAAAVRIQN KFRSWKGRKD  960
FLLIRQRIIK IQAHVRGHQV RKNYRKIIWS VGILDKVILR WRRKGRGLSR FRPEALGAGT  1020
SMVDEDDYDF LKEGRKQTEE RLQKALARVK SMVQYPEARD QYRRLLNVVS EMQETKAVYD  1080
KVLNNFEVDY DDDLIDLEAL LDDDTLMQTA S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097567.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097567.1	0.0	calmodulin-binding transcription activator 1-like
Refseq	XP_011097568.1	0.0	calmodulin-binding transcription activator 1-like
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A4D8Z707	0.0	A0A4D8Z707_SALSN; Uncharacterized protein
STRING	XP_009613615.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]