PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097563.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 380aa    MW: 41780.5 Da    PI: 6.5631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-07154175223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_011097563.1 154 FCEICGKGFKRDANLRMHMRAH 175
                     6*******************99 PP
2zf-C2H211.70.00078271286621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg+sFsrk+ L  H+ 
  XP_011097563.1 271 CGTSFSRKDKLFGHMA 286
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.32E-6150176No hitNo description
PROSITE profilePS5015711.967153180IPR007087Zinc finger, C2H2
SMARTSM003550.0015153175IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0021154173No hitNo description
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM0035552201234IPR015880Zinc finger, C2H2-like
SMARTSM0035513239261IPR015880Zinc finger, C2H2-like
SMARTSM00355230267291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSFFSDIRHT PAATKPPSGA SSVVPPQLSG GADPRVPLMN LSIVQTRMDC LQKFLSDSVN  60
SNTLLGQPQM DMVSSEIASA IHQIIVNGAA LLSSTPSLSS SYGVENTEEK EKGLQNPGKS  120
VLNPKVEIQE DEVLDDYEII ELDAVELLAE HVHFCEICGK GFKRDANLRM HMRAHGNQFK  180
TPEALAKPEK GGELIGQRTR FSCPYVGCNR NKQHKKFRPL KSAICVKNHF KRSHCPKMYS  240
CNRCNKKSFS VVADLKSHLK HCGESKWRCS CGTSFSRKDK LFGHMALFEG HMPAVVDDGK  300
EEKGKSMAAV MVVDDDEEEE EMNVKGVGVG MTCGLESNNG LFEGPMDGFG LIDNYCFEDV  360
LNSPNSVNTL GSGMEGFFNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0340373e-56KJ034037.1 Sesamum indicum clone TilSSR_5238 microsatellite sesame_5238 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097563.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A022Q8S41e-164A0A022Q8S4_ERYGU; Uncharacterized protein
STRINGMigut.L00137.1.p1e-168(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-78C2H2 family protein