PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097451.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 565aa MW: 61554.4 Da PI: 4.7536

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	459.1	2.6e-140	197	560	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAeav+++++++a+al++++ la ++ +m+++a+yf+eALa+++++ + p+++ e++ s++l++ f+e++P+lkf+h XP_011097451.1 197 LVHTLMACAEAVQQENMKMADALVKHVGILAVSQVGAMRKVATYFAEALARKIYK--------IYPQDSLESSYSDVLQM--HFYETCPYLKFAH 281 689*************************************************9........44555555556666555..4******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIlea++g++rvH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g++La++Ae++gv+fef+ +va++l+d++ XP_011097451.1 282 FTANQAILEAFSGATRVHVVDFSLKQGMQWPALMQALALRPGGPPAFRLTGVGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADID 376 ******************************************************************************************* PP GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eer 282 ++L +++ Ea+aVn+v++lhrll++++++e+ vL+ +k ++Pk+v++veqeadhn+++Flerf eal+yys++fdsle++ p++ +++ XP_011097451.1 377 ANMLGIRSgnVEAVAVNSVFELHRLLSRPGAIEK----VLNSIKAINPKIVTIVEQEADHNGNNFLERFNEALHYYSTMFDSLESSGPTQPdSQD 467 ***9888***********99999999....*****************************************998776656999 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +++lgr+i+nvvacegaer+erhetl++Wr+r+e+aGF+p++l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr XP_011097451.1 468 LAMTEVYLGRQICNVVACEGAERVERHETLARWRRRMESAGFSPAHLGSNAFKQASMLLALFAgGDGYRVEENEGCLMLGWHTRPLIATSAWR 560 ******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	4.8E-33	32	97	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	3.6E-33	32	105	No hit	No description
PROSITE profile	PS50985	67.736	171	539	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-138	197	560	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MKRDRDRGKT DAAAAAGKAK MWAEQQPDAG MDELFAVLGY KVKSSDMADV AEKLEQLEMA 60 MGSTAEDGSS VLSTDTVHYN PSDLSGWVES MLTELSSSGG YDLGPNPIGI SGESSGNLIS 120 FSNDDDLRAI PGGAVFGDRK KETFDDSESS SKRLKTKSFA GSEIFHENGS LSVAAAEEEE 180 EARPVVLVDS QEVGVRLVHT LMACAEAVQQ ENMKMADALV KHVGILAVSQ VGAMRKVATY 240 FAEALARKIY KIYPQDSLES SYSDVLQMHF YETCPYLKFA HFTANQAILE AFSGATRVHV 300 VDFSLKQGMQ WPALMQALAL RPGGPPAFRL TGVGPPQPDN TDALQQVGWK LAQLAETIGV 360 EFEFRGFVAN SLADIDANML GIRSGNVEAV AVNSVFELHR LLSRPGAIEK VLNSIKAINP 420 KIVTIVEQEA DHNGNNFLER FNEALHYYST MFDSLESSGP TQPDSQDLAM TEVYLGRQIC 480 NVVACEGAER VERHETLARW RRRMESAGFS PAHLGSNAFK QASMLLALFA GGDGYRVEEN 540 EGCLMLGWHT RPLIATSAWR LTAAE

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MKRDRDRGKT DAAAAAGKAK MWAEQQPDAG MDELFAVLGY KVKSSDMADV AEKLEQLEMA  60
MGSTAEDGSS VLSTDTVHYN PSDLSGWVES MLTELSSSGG YDLGPNPIGI SGESSGNLIS  120
FSNDDDLRAI PGGAVFGDRK KETFDDSESS SKRLKTKSFA GSEIFHENGS LSVAAAEEEE  180
EARPVVLVDS QEVGVRLVHT LMACAEAVQQ ENMKMADALV KHVGILAVSQ VGAMRKVATY  240
FAEALARKIY KIYPQDSLES SYSDVLQMHF YETCPYLKFA HFTANQAILE AFSGATRVHV  300
VDFSLKQGMQ WPALMQALAL RPGGPPAFRL TGVGPPQPDN TDALQQVGWK LAQLAETIGV  360
EFEFRGFVAN SLADIDANML GIRSGNVEAV AVNSVFELHR LLSRPGAIEK VLNSIKAINP  420
KIVTIVEQEA DHNGNNFLER FNEALHYYST MFDSLESSGP TQPDSQDLAM TEVYLGRQIC  480
NVVACEGAER VERHETLARW RRRMESAGFS PAHLGSNAFK QASMLLALFA GGDGYRVEEN  540
EGCLMLGWHT RPLIATSAWR LTAAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-65	204	559	26	378	Protein SCARECROW
5b3h_A	1e-65	204	559	25	377	Protein SCARECROW
5b3h_D	1e-65	204	559	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097451.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097451.1	0.0	DELLA protein GAI
Swissprot	Q7Y1B6	0.0	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A1U9XQK9	0.0	A0A1U9XQK9_9LAMI; GRAS family transcription factor family protein
STRING	Migut.K00894.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]