PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097391.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 385aa    MW: 42444 Da    PI: 8.8399
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.3e-201863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_011097391.1 18 KGPWSPEEDDLLQQLVHKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 63
                     79******************************.***********985 PP
2Myb_DNA-binding59.38.7e-1972114347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_011097391.1  72 AFTPEEDETIIRAHAKFGNK-WATIARLLP-GRTDNAVKNHWNST 114
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.7441368IPR017930Myb domain
SuperFamilySSF466892.34E-3215111IPR009057Homeodomain-like
SMARTSM007175.5E-181766IPR001005SANT/Myb domain
PfamPF002493.2E-201863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-261971IPR009057Homeodomain-like
CDDcd001677.43E-172062No hitNo description
SMARTSM007172.5E-1669117IPR001005SANT/Myb domain
PROSITE profilePS5129422.80270119IPR017930Myb domain
CDDcd001672.38E-1372115No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2472118IPR009057Homeodomain-like
PfamPF002493.8E-1672114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MKMAANISGR KMDVDRIKGP WSPEEDDLLQ QLVHKHGPRN WSLISKSIPG RSGKSCRLRW  60
CNQLSPQVEH RAFTPEEDET IIRAHAKFGN KWATIARLLP GRTDNAVKNH WNSTLKRKCT  120
SLSSDEGNFD DKNEFLSQSE RPLKRSVSAG SGVPGSGLCL SPGSPSGSDV SDSSLAVMSA  180
SHVYKPVARA GGIVPSSADD PPTGLSLSLP GVESTESTNQ RAESTQPTPN PIQLLQVLPT  240
PPSSPPPPPP PQSSSPKSAA PPPAQMPFSA ELMAVMQDMI RAEVRNYMMG LEQQHQQQYV  300
QHQQQYQQMC VQQANVNESA GSIDHLGMDG RKRNNLCFLF SLNFLLDLYL KNGQKKSFWC  360
ILYNYGNMEN HMMKGAEIKT RKEVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-40171183104C-Myb DNA-Binding Domain
1msf_C6e-40171183104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097391.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554254.10.0transcription factor MYB44
SwissprotO231603e-98MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2G9G8X41e-143A0A2G9G8X4_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_07s0129g01050.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-83myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]