PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011097250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 502aa MW: 55724.5 Da PI: 7.9327 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 149 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_011097250.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.8 | 6.3e-14 | 241 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_011097250.1 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 291 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-9 | 149 | 198 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 149 | 207 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.701 | 150 | 206 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-17 | 150 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 150 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-10 | 150 | 205 | No hit | No description |
CDD | cd00018 | 5.42E-24 | 241 | 301 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-17 | 241 | 301 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-9 | 241 | 291 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-16 | 242 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-31 | 242 | 305 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.593 | 242 | 299 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 502 aa Download sequence Send to blast |
MWDLNDSPDQ RRDDESEGGS DEKGKRVGSV SNSSSSAVVV EEGSEEEDTE RAGGKKRSSK 60 IFGFSVSHDY NNDDDAGPCS SPVTRQFFPV DESEMAGPPN FPRAHWVGVK FCQSEPHGGG 120 GGSSTFGKAA AELAQPLKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVE ADINFSLEEY EEDLKQMSNL TKEEFVHVLR RQSTGFPRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFEP 300 SIYEDELKAA AIDHNLDLSL GNSSASQQGG RGFREHHQPL STMQFEVDWR RNANGFRPER 360 NNRDGYETET LQLLSQTHLH SPGSSLKVNN EAAQRFGPPV RKTNEPHMLP MFHNRPFPPA 420 QSYHFPGGGS VNVNVNDGGR NVAIGGGDQV SVCVSRNEQQ WQMNQAQLFA TAAASSGFPQ 480 AQALRPQNWL QKNGIHPLIR PS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011097250.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM190074 | 0.0 | KM190074.1 Sesamum indicum cultivar Rajeswari APETALA 2 (AP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097250.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X2 | ||||
Swissprot | P47927 | 1e-133 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2G9G0S3 | 0.0 | A0A2G9G0S3_9LAMI; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-121 | AP2 family protein |