PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097222.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 457aa    MW: 52314.8 Da    PI: 7.5323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.91e-90764531373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A+ v++++  +a + L++l +++  +gd++qR+aayf+ +L a+l+   s  y+ +   +t+    +ee+ a++ +++vsP+++f+h
  XP_011097222.1  76 LIHLLLISATSVNENNICRAVENLCELYQNVCLTGDSVQRVAAYFADGLVAKLLTRKSPFYDMIMKIPTP----DEEFLAFTQLYKVSPFYQFAH 166
                     689****************************************************9******99888887....788899999************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaIlea+e+e     +++H+iDfdi +G+QWp+L+q+L++ +   +   l+iTg+g+    s eel+et++rL +fA+ + ++ fef+ l 
  XP_011097222.1 167 FTANQAILEAFEKErntnnRALHVIDFDICYGFQWPSLMQSLSENAttTNRILLKITGFGR----SMEELQETESRLVSFAKGFrNLVFEFHGL- 256
                     *************988887788*********************9985455669********....*****************9758*******5. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     ++  + +++++   k++E++aVnlv++l +l  +s +    ++e+Lk v sl P vvv+veqe ++++++Fl rf+e+l+y++a+fdsl+  lp 
  XP_011097222.1 257 VRGSKLVKPKQ---KKNETVAVNLVFHLNSLN-SSSK----ISETLKYVYSLCPSVVVLVEQEGSRDTHKFLPRFMESLHYFAAIFDSLDDCLPL 343
                     77788887776...89***********99996.3333....4569************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg.....yrveee.sgs 357
                     +s er ++E+  lg+ i+ v+ +  ++    r e++e+W++r+e+ GF  ++ s+k ++qaklll+        k  +dg     +rv e+ +g+
  XP_011097222.1 344 DSAERLSIEKNHLGKVIKCVINHDADNdCCPRFEKMETWKSRMESYGFLGIKQSSKSVMQAKLLLKirthsspvK--FDGendagFRVSERdEGQ 436
                     *********************9998875789**********************************8332222221..222223338888664556 PP

            GRAS 358 lv.lgWkdrpLvsvSaW 373
                     ++ lgW++r L+++S+W
  XP_011097222.1 437 AIsLGWQERFLITASSW 453
                     667************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.20450421IPR005202Transcription factor GRAS
PfamPF035143.6E-8876453IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEGIDEEEFL SLRLAVDTYS SHERKRKRKR REAPNHSDST CDEGKIFALL QMREQMLKLD  60
HKRKDGTHAD GRGLHLIHLL LISATSVNEN NICRAVENLC ELYQNVCLTG DSVQRVAAYF  120
ADGLVAKLLT RKSPFYDMIM KIPTPDEEFL AFTQLYKVSP FYQFAHFTAN QAILEAFEKE  180
RNTNNRALHV IDFDICYGFQ WPSLMQSLSE NATTTNRILL KITGFGRSME ELQETESRLV  240
SFAKGFRNLV FEFHGLVRGS KLVKPKQKKN ETVAVNLVFH LNSLNSSSKI SETLKYVYSL  300
CPSVVVLVEQ EGSRDTHKFL PRFMESLHYF AAIFDSLDDC LPLDSAERLS IEKNHLGKVI  360
KCVINHDADN DCCPRFEKME TWKSRMESYG FLGIKQSSKS VMQAKLLLKI RTHSSPVKFD  420
GENDAGFRVS ERDEGQAISL GWQERFLITA SSWCCNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-518445427379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12331RKRKRKRRE
22430KRKRKRR
32530RKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097222.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547495.10.0scarecrow-like protein 21
TrEMBLA0A022QBU40.0A0A022QBU4_ERYGU; Uncharacterized protein
STRINGMigut.N03341.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.22e-54GRAS family protein