PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011097220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 312aa MW: 35055.4 Da PI: 8.2103 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42.4 | 1.2e-13 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yG +C++aHg XP_011097220.1 236 FKTELCNKWEETGACPYGKNCQYAHG 261 79***********************8 PP | |||||||
2 | zf-CCCH | 21.3 | 4.9e-07 | 274 | 299 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_011097220.1 274 YKTEVCRMVLAGDICPYGHRCHFRHS 299 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-18 | 231 | 268 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-10 | 232 | 267 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-8 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-11 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 269 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-12 | 269 | 302 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MQKANISCGG LDATSASAAS PMHFSHSNPF LFPTSPTYVN SVPSFYSSLF QNYSSDSPSD 60 TASFDGGDTD RRLHDASCIL EYQQLYNRYK LCLAQLHDSI EELDALRREN ESLRLSNADL 120 SHRVALLYSR DRLFSEFNRL NVASPSAAAS RAAYPTATQP LTEHNRVERR SAERVPIPKS 180 ISVRSSGYLK ITQPGRDATC HKAVSQTPAA LQRVCIPGSK KEEEALEFDV YNQGMFKTEL 240 CNKWEETGAC PYGKNCQYAH GIKELRPVIR HPRYKTEVCR MVLAGDICPY GHRCHFRHSL 300 TEQERLMAAP PR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-21 | 236 | 302 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011097220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097220.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like isoform X2 | ||||
Swissprot | Q9C9N3 | 2e-74 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2G9GXG6 | 1e-173 | A0A2G9GXG6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L00491.1.p | 1e-144 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7784 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-74 | C3H family protein |