PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097216.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 516aa    MW: 57318.7 Da    PI: 5.7717
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS220.11.1e-671924552274
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L++ Ae++++++l+l q +Larl+++ +sp g+p+qR+a+yf+eAL++ l++     ++ l+ +++++++ +++++a+k+fs++sPi+ fs 
  XP_011097216.1 192 VDELIRLAECFETNSLQLGQVILARLNQRlRSPIGKPLQRAAFYFKEALQSLLTG-----SARLAHQPANSSEIIQTIKAQKTFSNISPIPMFSS 281
                     678*************************99*************************.....7778889999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+lea++g+++vHi+Dfdi+ G++W++++++La+++    + pp +Ri +++ +e   + e + ++e+L++fA+el+++fe+++++ +++
  XP_011097216.1 282 FTANQALLEAIDGSSHVHIVDFDIGFGGHWASFMKELADKAdlrkAAPPVIRISALVLEE--YAAESRLIRENLSQFARELNIRFEIDFILIRTF 374
                     **************************************8776766889**********66..99999**************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak 274
                     e l+++++++  gE +aV l  +++r +      e   + +L+ +++ sP+vvv+v+ e  + ++++s+ + +++ le+ys+l++s+ea 
  XP_011097216.1 375 EYLSFKAIKFIDGERVAVLLTPAIFRHV------E---TGFLNDLRRASPHVVVHVDVEgqMGYGAPSYRQAVIDGLEFYSTLLESMEAA 455
                     ***************************8......3...58*****************9944555999********************876 PP
2GRAS58.91e-18458515317374
            GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+l +aG+++v ls++a  qa++llr+v+++g++v +++++++l+W+drpLv++SaWr
  XP_011097216.1 458 EALVAAGLRQVGLSQFADFQAECLLRRVQVRGFHVVKRQAEMLLCWHDRPLVATSAWR 515
                     67889****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.326165516IPR005202Transcription factor GRAS
PfamPF035143.9E-65192455IPR005202Transcription factor GRAS
PfamPF035143.6E-16458515IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MKVPFPAANN HATSRTALSS TPTTTLPAVS SATTTTTAAS SPYEPKSVLE LRSSPSPVSD  60
HKPASNNTCA ADILLADDPL QLDQDHHMLI NPQEWDSWMR ELGLHDDSTT PVSKQLTSHS  120
DQSHQNHYSN DLLEFPPAIS SLDSNHDQFV PVDFGLLPDI PINHNSNSLN SFDALSVDLN  180
SSNWNVVGFD YVDELIRLAE CFETNSLQLG QVILARLNQR LRSPIGKPLQ RAAFYFKEAL  240
QSLLTGSARL AHQPANSSEI IQTIKAQKTF SNISPIPMFS SFTANQALLE AIDGSSHVHI  300
VDFDIGFGGH WASFMKELAD KADLRKAAPP VIRISALVLE EYAAESRLIR ENLSQFAREL  360
NIRFEIDFIL IRTFEYLSFK AIKFIDGERV AVLLTPAIFR HVETGFLNDL RRASPHVVVH  420
VDVEGQMGYG APSYRQAVID GLEFYSTLLE SMEAANSEAL VAAGLRQVGL SQFADFQAEC  480
LLRRVQVRGF HVVKRQAEML LCWHDRPLVA TSAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-1919751424377Protein SCARECROW
5b3h_D2e-1919751424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0296703e-41KJ029670.1 Sesamum indicum clone TilSSR_871 microsatellite sesame_871 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097216.20.0LOW QUALITY PROTEIN: scarecrow-like protein 15
SwissprotO232101e-133SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2G9FWT70.0A0A2G9FWT7_9LAMI; Uncharacterized protein
STRINGMigut.L00296.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-134GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]