PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 366aa    MW: 41233.9 Da    PI: 6.6099
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_011096904.1 13 RGLWSPEEDDKLIRHITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP

2Myb_DNA-binding52.21.4e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_011096904.1  66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.548860IPR017930Myb domain
SuperFamilySSF466891.09E-2810107IPR009057Homeodomain-like
SMARTSM007176.3E-131262IPR001005SANT/Myb domain
PfamPF002493.9E-151360IPR001005SANT/Myb domain
CDDcd001671.80E-111660No hitNo description
PROSITE profilePS5129426.13661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2564116IPR009057Homeodomain-like
SMARTSM007176.4E-1665113IPR001005SANT/Myb domain
PfamPF002492.9E-1566109IPR001005SANT/Myb domain
CDDcd001676.31E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DDKLIRHITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLSS NSTTHRPSRP TSNSNSTKLM NSSTPQHTFT VGTTTTSNSS TLLILPNPIY  180
NNQQYPDSPH HHHMPAVDDQ NQSSFISSCG HRNSMLSAAA LEFARTASTT SMETSPNPTL  240
FLSSTPVLND DNCINWASPA TTGILPILEH QSEEHHEMSQ AQHQAEEQQH MYEGQVYKVI  300
NHEQDDQLMM KSGHEHEYDE AAGNTLIDGS SNFDYEFVDC GLMAPPVYTT CSFINSMDDQ  360
LLGWEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593981e-131KF059398.1 Salvia miltiorrhiza MYB-related transcription factor (MYB44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096904.10.0transcription factor MYB26-like
TrEMBLA0A2R6QMA11e-101A0A2R6QMA1_ACTCH; Transcription factor like
STRINGXP_009589329.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67